Strain identifier
BacDive ID: 156825
Type strain: 
Species: Burkholderia territorii
Strain Designation: MSMB110, R-52241
Strain history: <- LMG; LMG 28158 <- P. Vandamme, Univ. Ghent, Belgium; R-52241 <- B.J. Currie, Menzies School of Health Research, Darwin, Australia; MSMB110
NCBI tax ID(s): 1503055 (species)
version 8.1 (current version)
General
@ref: 64778
BacDive-ID: 156825
DSM-Number: 107636
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Burkholderia territorii MSMB110 is an aerobe, mesophilic bacterium that was isolated from Water.
NCBI tax id
- NCBI tax id: 1503055
- Matching level: species
strain history
- @ref: 64778
- history: <- LMG; LMG 28158 <- P. Vandamme, Univ. Ghent, Belgium; R-52241 <- B.J. Currie, Menzies School of Health Research, Darwin, Australia; MSMB110
doi: 10.13145/bacdive156825.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Burkholderia
- species: Burkholderia territorii
- full scientific name: Burkholderia territorii De Smet et al. 2015
@ref: 64778
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Burkholderia
species: Burkholderia territorii
full scientific name: Burkholderia territorii De Smet et al. 2015
strain designation: MSMB110, R-52241
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 64778 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 64778 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 63249 | positive | growth | 30 | mesophilic |
| 64778 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63249
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 63249 | Water | 2003 | Northern Territory | Australia | AUS | Australia and Oceania |
| 64778 | water | Australia | AUS | Australia and Oceania |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
taxonmaps
- @ref: 69479
- File name: preview.99_198.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_18;97_18;98_21;99_198&stattab=map
- Last taxonomy: Burkholderia
- 16S sequence: LK023503
- Sequence Identity:
- Total samples: 5054
- soil counts: 1055
- aquatic counts: 564
- animal counts: 1930
- plant counts: 1505
Safety information
risk assessment
- @ref: 64778
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64778
- description: Burkholderia territorii partial 16S rRNA gene, type strain LMG 28158T
- accession: LK023503
- length: 1443
- database: ena
- NCBI tax ID: 1503055
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Burkholderia territorii LMG 28158 | GCA_902833055 | contig | ncbi | 1503055 |
| 66792 | Burkholderia territorii LMG 28158 | GCA_902499035 | contig | ncbi | 1503055 |
| 66792 | Burkholderia territorii CCUG 65687 | GCA_008802115 | contig | ncbi | 1503055 |
| 66792 | Burkholderia territorii DSM 107636 | GCA_016836745 | contig | ncbi | 1503055 |
| 66792 | Burkholderia territorii strain CCUG 65687 | 1503055.39 | wgs | patric | 1503055 |
| 66792 | Burkholderia territorii strain DSM 107636 | 1503055.48 | wgs | patric | 1503055 |
| 66792 | Burkholderia territorii strain LMG 28158 | 1503055.46 | wgs | patric | 1503055 |
| 66792 | Burkholderia territorii strain LMG 28158 | 1503055.47 | wgs | patric | 1503055 |
GC content
- @ref: 64778
- GC-content: 67
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.043 | no |
| gram-positive | no | 98.243 | no |
| anaerobic | no | 98.989 | yes |
| aerobic | yes | 91.3 | no |
| halophile | no | 94.033 | no |
| spore-forming | no | 95.444 | no |
| thermophile | no | 99.432 | yes |
| glucose-util | yes | 92.239 | no |
| flagellated | no | 81.91 | no |
| glucose-ferment | no | 85.676 | no |
External links
@ref: 64778
culture collection no.: CCUG 65687, LMG 28158, DSM 107636, CCUG 6568
straininfo link
- @ref: 109999
- straininfo: 392198
literature
- topic: Phylogeny
- Pubmed-ID: 25872960
- title: Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources.
- authors: De Smet B, Mayo M, Peeters C, Zlosnik JEA, Spilker T, Hird TJ, LiPuma JJ, Kidd TJ, Kaestli M, Ginther JL, Wagner DM, Keim P, Bell SC, Jacobs JA, Currie BJ, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000251
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, Burkholderia cepacia complex/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Humans, Molecular Sequence Data, Multilocus Sequence Typing, Northern Territory, *Phylogeny, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, Soil Microbiology, Sputum/microbiology, Water Microbiology
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63249 | Curators of the CCUG | https://www.ccug.se/strain?id=65687 | Culture Collection University of Gothenburg (CCUG) (CCUG 65687) | |
| 64778 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107636 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107636) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 109999 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID392198.1 |