Strain identifier

BacDive ID: 156803

Type strain: Yes

Species: Corynebacterium tapiri

Strain history: LMG 28165 <-- H.-J. Busse; Inst. für Mikrobiol., Veterinärmedizinische Univ. Wien, Austria; 2385/12.

NCBI tax ID(s): 1448266 (species)

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General

@ref: 63225

BacDive-ID: 156803

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Corynebacterium tapiri CCUG 65456 is a microaerophile, mesophilic bacterium that was isolated from Tonsil of a South American Tapir(Tapirus terrestri.

NCBI tax id

  • NCBI tax id: 1448266
  • Matching level: species

strain history

  • @ref: 67770
  • history: LMG 28165 <-- H.-J. Busse; Inst. für Mikrobiol., Veterinärmedizinische Univ. Wien, Austria; 2385/12.

doi: 10.13145/bacdive156803.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium tapiri
  • full scientific name: Corynebacterium tapiri Baumgardt et al. 2015

@ref: 63225

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium tapiri

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.776
69480100positive

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
63225positivegrowth37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63225
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69480no99.996
69481no100

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2), MK-8(H2)

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
63225Tonsil of a South American Tapir(Tapirus terrestri2012ViennaAustriaAUTEurope
67770Tonsil of a tapirInstitute of Bacteriology, Mycology and Hygiene at the Veterinary University ViennaAustriaAUTEurope

isolation source categories

Cat1Cat2
#Host#Mammals
#Host Body-Site#Oral cavity and airways

Sequence information

16S sequences

  • @ref: 67770
  • description: Corynebacterium tapiri partial 16S rRNA gene, type strain 2385/12T
  • accession: HG799102
  • length: 1423
  • database: ena
  • NCBI tax ID: 1448266

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium tapiri strain LMG 281651448266.3wgspatric1448266
67770Corynebacterium tapiri LMG 28165GCA_006334925contigncbi1448266

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno96.101no
gram-positiveyes94.071no
anaerobicno99.644yes
halophileyes83.903no
spore-formingno94.566no
thermophileno96.118no
glucose-utilyes87.674no
aerobicno55.495no
flagellatedno98.132no
glucose-fermentyes56.018no

External links

@ref: 63225

culture collection no.: CCUG 65456, LMG 28165, JCM 32434

straininfo link

  • @ref: 109980
  • straininfo: 392389

literature

  • topic: Phylogeny
  • Pubmed-ID: 26243302
  • title: Corynebacterium tapiri sp. nov. and Corynebacterium nasicanis sp. nov., isolated from a tapir and a dog, respectively.
  • authors: Baumgardt S, Loncaric I, Kampfer P, Busse HJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000510
  • year: 2015
  • mesh: Animals, Bacterial Typing Techniques, Corynebacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Dogs/*microbiology, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nose/microbiology, Nucleic Acid Hybridization, Palatine Tonsil/microbiology, Peptidoglycan/chemistry, Perissodactyla/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
63225Curators of the CCUGhttps://www.ccug.se/strain?id=65456Culture Collection University of Gothenburg (CCUG) (CCUG 65456)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
109980Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID392389.1