Strain identifier
version 8.1 (current version)
General
@ref: 62910
BacDive-ID: 156576
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Nonlabens arenilitoris CCUG 62919 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Seashore sand.
NCBI tax id
- NCBI tax id: 1217969
- Matching level: species
doi: 10.13145/bacdive156576.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Nonlabens
- species: Nonlabens arenilitoris
- full scientific name: Nonlabens arenilitoris Park et al. 2013
@ref: 62910
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Nonlabens
species: Nonlabens arenilitoris
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.993
colony morphology
- @ref: 62910
- incubation period: 2 days
Culture and growth conditions
culture temp
- @ref: 62910
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62910
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.999 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 62910
- sample type: Seashore sand
- sampling date: 2009
- geographic location: Geoje Island
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Sandy |
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Coast |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nonlabens arenilitoris KCTC 32109 | GCA_002954765 | contig | ncbi | 1217969 |
| 66792 | Nonlabens arenilitoris strain KCTC 32109 | 1217969.3 | wgs | patric | 1217969 |
| 66792 | Nonlabens arenilitoris KCTC 32109 | 2788500454 | draft | img | 1217969 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 88.847 | no |
| gram-positive | no | 97.696 | no |
| anaerobic | no | 99.232 | yes |
| aerobic | yes | 87.85 | yes |
| halophile | no | 58.863 | no |
| spore-forming | no | 95.759 | no |
| glucose-util | yes | 83.253 | no |
| flagellated | no | 96.38 | no |
| thermophile | no | 98.972 | yes |
| glucose-ferment | no | 89.524 | no |
External links
@ref: 62910
culture collection no.: CCUG 62919, KCTC 32109
straininfo link
- @ref: 109789
- straininfo: 409737
literature
- topic: Phylogeny
- Pubmed-ID: 23423354
- title: Nonlabens arenilitoris sp. nov., a member of the family Flavobacteriaceae isolated from seashore sand.
- authors: Park S, Kang CH, Yoon JH
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-013-9893-5
- year: 2013
- mesh: Aerobiosis, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Silicon Dioxide, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62910 | Curators of the CCUG | https://www.ccug.se/strain?id=62919 | Culture Collection University of Gothenburg (CCUG) (CCUG 62919) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 109789 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID409737.1 |