Strain identifier

BacDive ID: 15653

Type strain: No

Species: Streptomyces albidus

Strain Designation: 5320

Strain history: CIP <- 1995, JCM <- KCC <- IFO <- SAJ <- ISP: strain 5320 <- CBS <- J. Duché

NCBI tax ID(s): 1931 (species)

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General

@ref: 9458

BacDive-ID: 15653

DSM-Number: 40320

keywords: 16S sequence, Bacteria, mesophilic, Gram-positive, rod-shaped

description: Streptomyces albidus 5320 is a mesophilic, Gram-positive, rod-shaped bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 1931
  • Matching level: species

strain history

@refhistory
9458<- E.B. Shirling, ISP (Streptomyces albidus) <- CBS <- J. Duché
67770KCC S-0447 <-- IFO 13011 <-- SAJ <-- ISP 5320 <-- CBS 100.34 <-- J. Duché.
116191CIP <- 1995, JCM <- KCC <- IFO <- SAJ <- ISP: strain 5320 <- CBS <- J. Duché

doi: 10.13145/bacdive15653.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albidus
  • full scientific name: Streptomyces albidus Kaewkla and Franco 2022

@ref: 9458

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albidus

full scientific name: Streptomyces sp.

strain designation: 5320

type strain: no

Morphology

cell morphology

  • @ref: 116191
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9458GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
35675MEDIUM 122 - for StreptomycesyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (2.000 g);Starch maize (10.000 g)
9458ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
116191CIP Medium 122yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=122

culture temp

@refgrowthtypetemperaturerange
9458positivegrowth28mesophilic
35675positivegrowth30mesophilic
67770positivegrowth28mesophilic
116191positivegrowth30-37mesophilic
116191nogrowth45thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1161914853esculin+hydrolysis
11619117632nitrate+reduction
11619116301nitrite-reduction

metabolite production

  • @ref: 116191
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
116191oxidase-
116191beta-galactosidase+3.2.1.23
116191alcohol dehydrogenase+1.1.1.1
116191gelatinase+
116191amylase+
116191DNase+
116191caseinase+3.4.21.50
116191catalase+1.11.1.6
116191tween esterase+
116191lecithinase+
116191lipase+
116191lysine decarboxylase-4.1.1.18
116191ornithine decarboxylase-4.1.1.17
116191urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116191-+---+++---------+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116191+-+-+----+-----++-++---+--+----+-+---------------+---+-----++-----------++-----++--------+++-+-----

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184570
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

  • @ref: 116191
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces albidus strain DSM 40320 16S ribosomal RNA gene, partial sequenceGU383176779ena67266
67770Streptomyces albidus gene for 16S rRNA, partial sequence, strain: NBRC 14052AB1845701432ena67266

GC content

  • @ref: 67770
  • GC-content: 69
  • method: fluorimetric

External links

@ref: 9458

culture collection no.: DSM 40320, ATCC 25423, CBS 100.34, CBS 921.69, ETH 16824, IFO 13011, ISP 5320, KCC S-0447, NBRC 13011, RIA 1203, JCM 4447, BCRC 12049, CIP 104426, IFO 14052, KCTC 9684, NBRC 14052, NRRL B-1672, VKM Ac-734

straininfo link

  • @ref: 84739
  • straininfo: 49803

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9458Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40320)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40320
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35675Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16333
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84739Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49803.1StrainInfo: A central database for resolving microbial strain identifiers
116191Curators of the CIPCollection of Institut Pasteur (CIP 104426)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104426