Strain identifier
BacDive ID: 156428
Type strain: 
Species: Methyloversatilis thermotolerans
Strain Designation: 3t
Strain history: <- N. V. Doronina, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia; 3t
NCBI tax ID(s): 1346290 (species)
version 8.1 (current version)
General
@ref: 62693
BacDive-ID: 156428
DSM-Number: 25216
keywords: genome sequence, Bacteria, aerobe, mesophilic, motile
description: Methyloversatilis thermotolerans 3t is an aerobe, mesophilic, motile bacterium that was isolated from Water,geyser of Kamchatka.
NCBI tax id
- NCBI tax id: 1346290
- Matching level: species
strain history
- @ref: 68963
- history: <- N. V. Doronina, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia; 3t
doi: 10.13145/bacdive156428.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Sterolibacteriaceae
- genus: Methyloversatilis
- species: Methyloversatilis thermotolerans
- full scientific name: Methyloversatilis thermotolerans Doronina et al. 2014
@ref: 62693
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Nitrosomonadales
family: Sterolibacteriaceae
genus: Methyloversatilis
species: Methyloversatilis thermotolerans
full scientific name: Methyloversatilis thermotolerans Doronina et al. 2014
strain designation: 3t
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 99.147 | |
| 69480 | 99.999 | negative |
colony morphology
- @ref: 62693
- incubation period: 2 days
multimedia
- @ref: 68963
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25216.jpg
- caption: Micrograph of DSM 25216. Scale bar represents 1 and 2 µm, respectively.
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
- @ref: 68963
- name: METHYLOVERSATILIS THERMOTOLERANS MEDIUM (DSMZ Medium 1122a)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1122a.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 62693 | positive | growth | 30 | mesophilic |
| 68963 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62693
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.989 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 62693
- sample type: Water,geyser of Kamchatka
- sampling date: 2009
- geographic location: Kamchatka
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
Sequence information
Genome sequences
- @ref: 66792
- description: Methyloversatilis thermotolerans 3t
- accession: GCA_000372885
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1346290
GC content
- @ref: 68963
- GC-content: 63.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.018 | no |
| flagellated | yes | 82.897 | no |
| gram-positive | no | 99.244 | no |
| anaerobic | no | 97.986 | yes |
| aerobic | yes | 88.264 | no |
| halophile | no | 90.735 | no |
| spore-forming | no | 94.578 | no |
| thermophile | no | 98.353 | yes |
| glucose-util | no | 66.391 | no |
| glucose-ferment | no | 89.838 | no |
External links
@ref: 62693
culture collection no.: CCUG 61694, VKM B-2692, DSM 25216
straininfo link
| @ref | straininfo |
|---|---|
| 109667 | 398327 |
| 109668 | 408860 |
literature
- topic: Phylogeny
- Pubmed-ID: 24048869
- title: Methyloversatilis thermotolerans sp. nov., a novel thermotolerant facultative methylotroph isolated from a hot spring.
- authors: Doronina NV, Kaparullina EN, Trotsenko YA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.055046-0
- year: 2013
- mesh: Alcohol Oxidoreductases/metabolism, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Hot Springs/*microbiology, Methanol/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodocyclaceae/*classification/genetics/isolation & purification, Russia, Ubiquinone/chemistry
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62693 | Curators of the CCUG | https://www.ccug.se/strain?id=61694 | Culture Collection University of Gothenburg (CCUG) (CCUG 61694) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68963 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25216 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25216) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 109667 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398327.1 | |
| 109668 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408860.1 |