Strain identifier
BacDive ID: 15634
Type strain: 
Species: Streptomyces sp.
Strain history: KCC S-0527 <-- IFO 13097 <-- SAJ <-- ISP 5079 <-- S. A. Waksman 3353.
NCBI tax ID(s): 1931 (species)
version 9 (current version)
General
@ref: 9292
BacDive-ID: 15634
DSM-Number: 40079
keywords: 16S sequence, Bacteria
description: Streptomyces sp. DSM 40079 is a bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1931
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9292 | <- E.B. Shirling, ISP (Streptomyces verne) <- S.A. Waksman, IMRU |
| 67770 | KCC S-0527 <-- IFO 13097 <-- SAJ <-- ISP 5079 <-- S. A. Waksman 3353. |
doi: 10.13145/bacdive15634.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces sp.
- full scientific name: Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)
synonyms
@ref synonym 20215 Microechinospora 20215 Carbonactinospora 20215 Actinosporangium 20215 Actinopycnidium 20215 Elytrosporangium 20215 Streptoverticillium 20215 Chainia 20215 Indiella 20215 Actinacidiphila 20215 Kitasatoa 20215 Microellobosporia
@ref: 9292
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces sp.
full scientific name: Streptomyces sp.
type strain: no
Morphology
multimedia
- @ref: 9292
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40079.jpg
- caption: Medium 252 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9292 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9292 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9292 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 9292 | soil | ||||
| 67770 | Upland soil | CA | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces verne gene for 16S rRNA, partial sequence, strain: NBRC 13097 | AB184309 | 1461 | nuccore | 66432 |
| 20218 | Streptomyces verne gene for 16S rRNA, partial sequence, strain: NBRC 3112 | AB184727 | 1481 | nuccore | 66432 |
External links
@ref: 9292
culture collection no.: DSM 40079, ATCC 25509, ATCC 3353, CBS 651.69, IFO 13097, IFO 3112, IMRU 3353, ISP 5079, KCC S-0527, NBRC 13097, NBRC 3112, RIA 1289, JCM 4527, BCRC 13683, CBS 139.20, IMET 41383, JCM 4089
straininfo link
- @ref: 84720
- straininfo: 34669
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9292 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40079) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40079 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 84720 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID34669.1 | StrainInfo: A central database for resolving microbial strain identifiers |