Strain identifier
BacDive ID: 156257
Type strain: 
Species: Mycobacterium salmoniphilum
NCBI tax ID(s): 404941 (species)
version 8.1 (current version)
General
@ref: 62479
BacDive-ID: 156257
keywords: genome sequence, Bacteria, aerobe, mesophilic
description: Mycobacterium salmoniphilum CCUG 60883 is an aerobe, mesophilic bacterium that was isolated from Drinking water.
NCBI tax id
- NCBI tax id: 404941
- Matching level: species
doi: 10.13145/bacdive156257.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium salmoniphilum
- full scientific name: Mycobacterium salmoniphilum (ex Ross 1960) Whipps et al. 2007
synonyms
- @ref: 20215
- synonym: Mycobacteroides salmoniphilum
@ref: 62479
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium salmoniphilum
type strain: no
Culture and growth conditions
culture temp
- @ref: 62479
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62479
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
- @ref: 62479
- sample type: Drinking water
- sampling date: 2011-02-01
- geographic location: Uppsala
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Freshwater
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacteroides salmoniphilum CCUG 60883 | GCA_004366675 | scaffold | ncbi | 404941 |
| 66792 | Mycobacteroides salmoniphilum strain CCUG 60883 | 404941.11 | wgs | patric | 404941 |
| 66792 | Mycobacteroides salmoniphilum CCUG 60883 | 2862102985 | draft | img | 404941 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 96.124 | no |
| flagellated | no | 98.659 | no |
| gram-positive | yes | 91.092 | no |
| anaerobic | no | 99.456 | yes |
| aerobic | yes | 92.809 | no |
| halophile | no | 93.518 | no |
| spore-forming | no | 84.635 | no |
| glucose-util | yes | 83.583 | no |
| thermophile | no | 99.166 | yes |
| glucose-ferment | no | 93.835 | no |
External links
@ref: 62479
culture collection no.: CCUG 60883
straininfo link
- @ref: 109528
- straininfo: 408891
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62479 | Curators of the CCUG | https://www.ccug.se/strain?id=60883 | Culture Collection University of Gothenburg (CCUG) (CCUG 60883) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 109528 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408891.1 |