Strain identifier
version 8.1 (current version)
General
@ref: 62329
BacDive-ID: 156132
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Haemophilus influenzae CCUG 60490 is a microaerophile, mesophilic bacterium that was isolated from Human cerebrospinal fluid.
NCBI tax id
- NCBI tax id: 727
- Matching level: species
doi: 10.13145/bacdive156132.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Haemophilus
- species: Haemophilus influenzae
- full scientific name: Haemophilus influenzae corrig. (Lehmann and Neumann 1896) Winslow et al. 1917 (Approved Lists 1980)
synonyms
@ref synonym 20215 Hemophilus influenzae 20215 Bacterium influenzae
@ref: 62329
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Haemophilus
species: Haemophilus influenzae
type strain: no
Culture and growth conditions
culture temp
- @ref: 62329
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62329
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
- @ref: 62329
- sample type: Human cerebrospinal fluid
- sampling date: 2010-11-01
- geographic location: Sundsvall
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Cerebrospinal fluid |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haemophilus influenzae CCUG 60490 | GCA_001679415 | scaffold | ncbi | 727 |
| 66792 | Haemophilus influenzae strain CCUG 60490 | 727.964 | wgs | patric | 727 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 96.328 | no |
| gram-positive | no | 98.357 | no |
| anaerobic | no | 95.722 | no |
| aerobic | no | 95.511 | yes |
| halophile | yes | 53.434 | no |
| spore-forming | no | 98.673 | no |
| glucose-util | no | 50.963 | no |
| thermophile | no | 98.575 | yes |
| motile | no | 90.933 | no |
| glucose-ferment | yes | 52.808 | no |
External links
@ref: 62329
culture collection no.: CCUG 60490
straininfo link
- @ref: 109433
- straininfo: 411611
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62329 | Curators of the CCUG | https://www.ccug.se/strain?id=60490 | Culture Collection University of Gothenburg (CCUG) (CCUG 60490) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 109433 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411611.1 |