Strain identifier
version 9.1 (current version)
General
@ref: 62291
BacDive-ID: 156096
keywords: genome sequence, Bacteria, microaerophile
description: Haemophilus parainfluenzae CCUG 60358 is a microaerophile bacterium that was isolated from Human urine,34-yr-old woman.
NCBI tax id
- NCBI tax id: 729
- Matching level: species
doi: 10.13145/bacdive156096.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Haemophilus
- species: Haemophilus parainfluenzae
- full scientific name: Haemophilus parainfluenzae Rivers 1922 (Approved Lists 1980)
@ref: 62291
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Haemophilus
species: Haemophilus parainfluenzae
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.155 | |
| 69480 | 97.978 | negative |
Culture and growth conditions
culture temp
- @ref: 62291
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 62291
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 94.083 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 62291
- sample type: Human urine,34-yr-old woman
- sampling date: 2010-10-08
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Female |
| #Host Body Product | #Fluids | #Urine |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haemophilus sp. CCUG 60358 | GCA_001679485 | scaffold | ncbi | 1859695 |
| 66792 | Haemophilus sp. CCUG 60358 | 1859695.3 | wgs | patric | 1859695 |
| 66792 | Haemophilus sp. CCUG 60358 | 2903676280 | draft | img | 1859695 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.978 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.678 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 88.14 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 94.083 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 93.155 | no |
External links
@ref: 62291
culture collection no.: CCUG 60358
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62291 | Curators of the CCUG | https://www.ccug.se/strain?id=60358 | Culture Collection University of Gothenburg (CCUG) (CCUG 60358) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |