Strain identifier
BacDive ID: 156024
Type strain: 
Species: Flavobacterium plurextorum
NCBI tax ID(s): 1114867 (species)
version 8.1 (current version)
General
@ref: 62211
BacDive-ID: 156024
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Flavobacterium plurextorum CCUG 60112 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Trout eggs .
NCBI tax id
- NCBI tax id: 1114867
- Matching level: species
doi: 10.13145/bacdive156024.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium plurextorum
- full scientific name: Flavobacterium plurextorum Zamora et al. 2014
@ref: 62211
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium plurextorum
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.996
Culture and growth conditions
culture temp
- @ref: 62211
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 62211
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.997 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 62211
- sample type: Trout eggs (Oncorhynchus mykiss)
- sampling date: 2008-08-27
- geographic location: Madrid
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Fishes | |
| #Host Body Product | #Urogenital tract | #Egg |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Flavobacterium plurextorum CCUG 60112 | GCA_002217395 | scaffold | ncbi | 1114867 |
| 66792 | Flavobacterium plurextorum strain CCUG 60112 | 1114867.4 | wgs | patric | 1114867 |
| 66792 | Flavobacterium plurextorum CCUG 60112 | 2906837629 | draft | img | 1114867 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 93.718 | no |
| gram-positive | no | 98.262 | no |
| anaerobic | no | 99.792 | yes |
| aerobic | yes | 91.253 | yes |
| halophile | no | 97.294 | no |
| spore-forming | no | 92.461 | no |
| thermophile | no | 99.329 | yes |
| glucose-util | yes | 92.382 | no |
| glucose-ferment | no | 88.808 | no |
| motile | no | 81.016 | no |
External links
@ref: 62211
culture collection no.: CCUG 60112
straininfo link
- @ref: 109354
- straininfo: 393001
literature
- topic: Phylogeny
- Pubmed-ID: 23825681
- title: Flavobacterium plurextorum sp. nov. Isolated from Farmed Rainbow Trout (Oncorhynchus mykiss).
- authors: Zamora L, Fernandez-Garayzabal JF, Sanchez-Porro C, Palacios MA, Moore ER, Dominguez L, Ventosa A, Vela AI
- journal: PLoS One
- DOI: 10.1371/journal.pone.0067741
- year: 2013
- mesh: Animals, *Aquaculture, Flavobacterium/classification/genetics/*isolation & purification, Genotype, Oncorhynchus mykiss/*growth & development/*microbiology, Phenotype, Phylogeny
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 62211 | Curators of the CCUG | https://www.ccug.se/strain?id=60112 | Culture Collection University of Gothenburg (CCUG) (CCUG 60112) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 109354 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID393001.1 |