Strain identifier
version 9.1 (current version)
General
@ref: 61981
BacDive-ID: 155857
keywords: genome sequence, Bacteria, anaerobe, Gram-positive
description: Eremococcus coleocola CCUG 59478 is an anaerobe, Gram-positive bacterium that was isolated from Human vagina.
NCBI tax id
- NCBI tax id: 88132
- Matching level: species
doi: 10.13145/bacdive155857.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Aerococcaceae
- genus: Eremococcus
- species: Eremococcus coleocola
- full scientific name: Eremococcus coleocola Collins et al. 1999
@ref: 61981
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Aerococcaceae
genus: Eremococcus
species: Eremococcus coleocola
type strain: no
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 94
Culture and growth conditions
culture temp
- @ref: 61981
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 61981
- oxygen tolerance: anaerobe
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 61981
- sample type: Human vagina
- sampling date: 2008
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Urogenital tract | #Vagina |
| #Host | #Human | #Female |
Sequence information
Genome sequences
- @ref: 66792
- description: Eremococcus coleocola ACS-139-V-Col8
- accession: 908337.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 908337
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 85.238 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 85.243 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.659 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.93 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.031 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 94 | no |
External links
@ref: 61981
culture collection no.: CCUG 59478
straininfo link
- @ref: 109225
- straininfo: 410210
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 61981 | Curators of the CCUG | https://www.ccug.se/strain?id=59478 | Culture Collection University of Gothenburg (CCUG) (CCUG 59478) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 109225 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID410210.1 |