Strain identifier
version 8.1 (current version)
General
@ref: 61927
BacDive-ID: 155805
keywords: genome sequence, Bacteria, aerobe, mesophilic, motile
description: Pseudomonas aeruginosa CCUG 59347 is an aerobe, mesophilic, motile bacterium that was isolated from Human trachea.
NCBI tax id
- NCBI tax id: 287
- Matching level: species
doi: 10.13145/bacdive155805.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas aeruginosa
- full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium aeruginosum
@ref: 61927
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas aeruginosa
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 99.343 | |
| 69480 | 99.985 | negative |
Culture and growth conditions
culture temp
- @ref: 61927
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 61927
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.923 |
| 69481 | no | 100 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 61927 C12:0 3.5 12 61927 C14:0 0.6 14 61927 C15:0 0.4 15 61927 C16:0 26.4 16 61927 C18:0 0.4 18 61927 C10:0 3OH 3.1 11.423 61927 C12:0 2OH 5.2 13.178 61927 C12:0 3OH 4.1 13.455 61927 C16:1 ω7c 11.8 15.819 61927 C16:1 ω7c/C15:0 ISO 2OH 4.7 15.85 61927 C17:0 CYCLO 0.7 16.888 61927 C18:1 ω7c /12t/9t 37.6 17.824 61927 C18:1 ω9c 0.5 17.769 61927 C18:2 ω6,9c/C18:0 ANTE 0.6 17.724 61927 C19:0 CYCLO ω8c 0.6 18.9 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
- @ref: 61927
- sample type: Human trachea
- sampling date: 2006
- geographic location: Oslo
- country: Norway
- origin.country: NOR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Trachea |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas aeruginosa CCUG 59347 | GCA_008180895 | scaffold | ncbi | 287 |
| 66792 | Pseudomonas aeruginosa strain CCUG 59347 | 287.9875 | wgs | patric | 287 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.249 | no |
| flagellated | yes | 86.794 | no |
| gram-positive | no | 98.392 | no |
| anaerobic | no | 98.315 | no |
| aerobic | yes | 93.452 | yes |
| halophile | no | 90.332 | no |
| spore-forming | no | 92.903 | no |
| glucose-util | yes | 89.906 | no |
| thermophile | no | 99.826 | yes |
| glucose-ferment | no | 89.846 | no |
External links
@ref: 61927
culture collection no.: CCUG 59347
straininfo link
- @ref: 109180
- straininfo: 409612
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 61927 | Curators of the CCUG | https://www.ccug.se/strain?id=59347 | Culture Collection University of Gothenburg (CCUG) (CCUG 59347) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 109180 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID409612.1 |