Strain identifier

BacDive ID: 155338

Type strain: No

Species: Pediococcus acidilactici

NCBI tax ID(s): 1254 (species)

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General

@ref: 61303

BacDive-ID: 155338

keywords: Bacteria, microaerophile, mesophilic

description: Pediococcus acidilactici CCUG 57368 is a microaerophile, mesophilic bacterium that was isolated from Human abdomen,77-yr-old man.

NCBI tax id

  • NCBI tax id: 1254
  • Matching level: species

doi: 10.13145/bacdive155338.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Pediococcus
  • species: Pediococcus acidilactici
  • full scientific name: Pediococcus acidilactici Lindner 1887 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Pediococcus lolii

@ref: 61303

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Pediococcus

species: Pediococcus acidilactici

type strain: no

Culture and growth conditions

culture temp

  • @ref: 61303
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 61303
  • oxygen tolerance: microaerophile

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-lyxose-builds acid from62318
68371D-tagatose+builds acid from16443
68371turanose-builds acid from32528
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose+builds acid from17057
68371esculin-builds acid from4853
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371glycerol-builds acid from17754
68371D-fucose-builds acid from28847
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371N-acetylglucosamine+builds acid from59640
68371D-mannitol-builds acid from16899
68371D-mannose+builds acid from16024
68371L-xylose-builds acid from65328
68371erythritol-builds acid from17113
68381arginine+hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose-builds acid from17716
68381trehalose+builds acid from27082
68381raffinose-builds acid from16634
68381sucrose-builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose-builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside-builds acid from320055
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68381beta-mannosidase-3.2.1.25
68381urease-3.5.1.5
68381glycyl tryptophan arylamidase-
68381pyrrolidonyl arylamidase-3.4.19.3
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase+3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    61303C16:032.816
    61303C18:0818
    61303C16:1 ω7c0.615.819
    61303C16:1 ω7c/C15:0 ISO 2OH415.85
    61303C18:1 ω7c /12t/9t36.717.824
    61303C18:1 ω9c2.417.769
    61303C18:2 ω6,9c/C18:0 ANTE8.417.724
    61303C19:0 CYCLO ω9c5.318.87
    61303C20:2 ω6,9c1.819.735
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
61303----+++---++++--------+----+----+---------+-------

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
61303+---------+-----++--------------

Isolation, sampling and environmental information

isolation

  • @ref: 61303
  • sample type: Human abdomen,77-yr-old man
  • sampling date: 2008-11-20
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body-Site#Other#Abdomen
#Infection#Patient

External links

@ref: 61303

culture collection no.: CCUG 57368

straininfo link

  • @ref: 108789
  • straininfo: 409072

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
61303Curators of the CCUGhttps://www.ccug.se/strain?id=57368Culture Collection University of Gothenburg (CCUG) (CCUG 57368)
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
108789Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID409072.1