Strain identifier

BacDive ID: 155108

Type strain: No

Species: Shewanella algae

NCBI tax ID(s): 38313 (species)

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General

@ref: 60992

BacDive-ID: 155108

keywords: Bacteria, aerobe, mesophilic

description: Shewanella algae CCUG 56496 is an aerobe, mesophilic bacterium that was isolated from Human trachea,77-yr-old man.

NCBI tax id

  • NCBI tax id: 38313
  • Matching level: species

doi: 10.13145/bacdive155108.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella algae
  • full scientific name: Shewanella algae corrig. Simidu et al. 1990

  • synonyms

    @refsynonym
    20215Shewanella haliotis
    20215Shewanella alga
    20215Shewanella upenei

@ref: 60992

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella algae

type strain: no

Culture and growth conditions

culture temp

  • @ref: 60992
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 60992
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    60992C11:00.311
    60992C12:0112
    60992C13:01.613
    60992C14:00.614
    60992C15:09.315
    60992C16:03.816
    60992C17:02.717
    60992C11:0 3OH0.712.441
    60992C12:0 3OH0.613.455
    60992C13:0 3OH/C15:1 i I/H214.469
    60992C13:0 iso6.212.612
    60992C13:0 ISO 3OH2.514.11
    60992C14:0 3OH/C16:1 ISO I0.515.485
    60992C14:0 ISO0.713.618
    60992C15:0 ISO27.714.621
    60992C15:0 ISO 3OH0.516.135
    60992C15:1 ω6c0.914.856
    60992C15:1 ω8c0.914.792
    60992C16:1 ω7c8.515.819
    60992C16:1 ω9c0.915.774
    60992C17:0 iso116.629
    60992C17:1 ω6c1.516.862
    60992C17:1 ω8c22.116.792
    60992C18:1 ω7c /12t/9t1.317.824
    60992C18:1 ω9c1.517.769
    60992C18:2 ω6,9c/C18:0 ANTE0.617.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
60992+----++-+---+--+-+--+

Isolation, sampling and environmental information

isolation

  • @ref: 60992
  • sample type: Human trachea,77-yr-old man
  • sampling date: 2008-05-23
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body-Site#Oral cavity and airways#Trachea
#Infection#Patient

External links

@ref: 60992

culture collection no.: CCUG 56496

straininfo link

  • @ref: 108603
  • straininfo: 411215

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
60992Curators of the CCUGhttps://www.ccug.se/strain?id=56496Culture Collection University of Gothenburg (CCUG) (CCUG 56496)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
108603Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID411215.1