Strain identifier

BacDive ID: 154935

Type strain: Yes

Species: Campylobacter peloridis

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 60729

BacDive-ID: 154935

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, Gram-negative

description: Campylobacter peloridis CCUG 55787 is a microaerophile, Gram-negative bacterium that was isolated from Shellfish.

NCBI tax id

NCBI tax idMatching level
1388753strain
488546species

doi: 10.13145/bacdive154935.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter peloridis
  • full scientific name: Campylobacter peloridis Debruyne et al. 2009

@ref: 60729

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter peloridis

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.85

colony morphology

  • @ref: 60729
  • incubation period: 3 days

Culture and growth conditions

culture temp

  • @ref: 60729
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 60729
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no96.836

Isolation, sampling and environmental information

isolation

  • @ref: 60729
  • sample type: Shellfish
  • sampling date: 1993
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes

Sequence information

16S sequences

  • @ref: 124043
  • description: Campylobacter peloridis partial 16S ribosomal RNA gene, type strain LMG 23910T
  • accession: AM922331
  • length: 1497
  • database: nuccore
  • NCBI tax ID: 488546

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter peloridis LMG 23910GCA_000816785completencbi1388753
66792Campylobacter peloridis LMG 239101388753.5completepatric1388753
66792Campylobacter peloridis LMG 239101388753.7plasmidpatric1388753
66792Campylobacter peloridis LMG 239101388753.6plasmidpatric1388753
66792Campylobacter peloridis LMG 239102627854132completeimg1388753

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.414no
flagellatedyes57.181no
gram-positiveno98.85no
anaerobicno80.892yes
aerobicno98.337no
halophileno79.652no
spore-formingno96.836no
glucose-utilno81.822no
thermophileno78.971yes
glucose-fermentno86.405no

External links

@ref: 60729

culture collection no.: CCUG 55787, LMG 23910

straininfo link

  • @ref: 108461
  • straininfo: 26705

literature

  • topic: Phylogeny
  • Pubmed-ID: 19406805
  • title: Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov.
  • authors: Debruyne L, On SL, De Brandt E, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000851-0
  • year: 2009
  • mesh: Animals, Bacterial Proteins/chemistry/genetics, Bacterial Typing Techniques, Bivalvia/*microbiology, Campylobacter/*classification/genetics/isolation & purification/physiology, Campylobacter Infections/*microbiology, Campylobacter lari/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Diarrhea/microbiology, Genes, rRNA, Heat-Shock Proteins/genetics, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Shellfish/*microbiology, Species Specificity
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
60729Curators of the CCUGhttps://www.ccug.se/strain?id=55787Culture Collection University of Gothenburg (CCUG) (CCUG 55787)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
108461Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID26705.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy