Strain identifier
BacDive ID: 154935
Type strain: 
Species: Campylobacter peloridis
NCBI tax ID(s): 1388753 (strain), 488546 (species)
version 9.3 (current version)
General
@ref: 60729
BacDive-ID: 154935
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Campylobacter peloridis CCUG 55787 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Shellfish.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1388753 | strain |
| 488546 | species |
doi: 10.13145/bacdive154935.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter peloridis
- full scientific name: Campylobacter peloridis Debruyne et al. 2009
@ref: 60729
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter peloridis
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 99.5 |
| 125438 | negative | 97.477 |
colony morphology
- @ref: 60729
- incubation period: 3 days
Culture and growth conditions
culture temp
- @ref: 60729
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 60729 | microaerophile | |
| 125439 | obligate aerobe | 91 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 98.3 |
| 125438 | no | 96.945 |
Isolation, sampling and environmental information
isolation
- @ref: 60729
- sample type: Shellfish
- sampling date: 1993
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
Sequence information
16S sequences
- @ref: 124043
- description: Campylobacter peloridis partial 16S ribosomal RNA gene, type strain LMG 23910T
- accession: AM922331
- length: 1497
- database: nuccore
- NCBI tax ID: 488546
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Campylobacter peloridis LMG 23910 | GCA_000816785 | complete | ncbi | 1388753 |
| 66792 | Campylobacter peloridis LMG 23910 | 1388753.5 | complete | patric | 1388753 |
| 66792 | Campylobacter peloridis LMG 23910 | 1388753.7 | plasmid | patric | 1388753 |
| 66792 | Campylobacter peloridis LMG 23910 | 1388753.6 | plasmid | patric | 1388753 |
| 66792 | Campylobacter peloridis LMG 23910 | 2627854132 | complete | img | 1388753 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.477 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 80.707 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 86.562 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 96.945 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 87.643 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 63.724 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 66.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 91 |
External links
@ref: 60729
culture collection no.: CCUG 55787, LMG 23910
straininfo link
- @ref: 108461
- straininfo: 26705
literature
- topic: Phylogeny
- Pubmed-ID: 19406805
- title: Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov.
- authors: Debruyne L, On SL, De Brandt E, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000851-0
- year: 2009
- mesh: Animals, Bacterial Proteins/chemistry/genetics, Bacterial Typing Techniques, Bivalvia/*microbiology, Campylobacter/*classification/genetics/isolation & purification/physiology, Campylobacter Infections/*microbiology, Campylobacter lari/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Diarrhea/microbiology, Genes, rRNA, Heat-Shock Proteins/genetics, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Shellfish/*microbiology, Species Specificity
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 60729 | Curators of the CCUG | https://www.ccug.se/strain?id=55787 | Culture Collection University of Gothenburg (CCUG) (CCUG 55787) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 108461 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID26705.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |