Strain identifier
BacDive ID: 15476
Type strain: 
Species: Streptomyces pluricolorescens
Strain Designation: 91-T1-1 (NHIJ 238)
Strain history: KCC S-0302 <-- CUB 141 <-- ISP 5019 <-- Y. Okami 91-T1-1 (NIHJ 238).
NCBI tax ID(s): 37480 (species)
version 9.1 (current version)
General
@ref: 9219
BacDive-ID: 15476
DSM-Number: 40019
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, antibiotic compound production
description: Streptomyces pluricolorescens 91-T1-1 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 37480
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9219 | <- E.B. Shirling, ISP <- Y. Okami, 91-T1-1 |
| 67770 | KCC S-0302 <-- CUB 141 <-- ISP 5019 <-- Y. Okami 91-T1-1 (NIHJ 238). |
doi: 10.13145/bacdive15476.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces pluricolorescens
- full scientific name: Streptomyces pluricolorescens Okami and Umezawa 1961 (Approved Lists 1980)
@ref: 9219
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces pluricolorescens
full scientific name: Streptomyces pluricolorescens Okami and Umezawa 1961
strain designation: 91-T1-1 (NHIJ 238)
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 92.034
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9219 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9219 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9219 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 91.668
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 90.368
compound production
| @ref | compound |
|---|---|
| 9219 | pluramycin A and B |
| 67770 | Pluramycins A and B |
metabolite production
- @ref: 67770
- metabolite: pluramycin A
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 9219 | soil | Japan | JPN | Asia | |
| 67770 | Soil | Japan | JPN | Asia | Nagano Pref. |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_135.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184162
- Sequence Identity:
- Total samples: 4030
- soil counts: 2441
- aquatic counts: 286
- animal counts: 1009
- plant counts: 294
Safety information
risk assessment
- @ref: 9219
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces pluricolorescens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4602 | D44258 | 120 | nuccore | 37480 |
| 20218 | Streptomyces pluricolorescens gene for 16S rRNA, partial sequence, strain: NBRC 12808 | AB184162 | 1470 | nuccore | 37480 |
| 20218 | Streptomyces pluricolorescens strain NRRL B-2121T 16S ribosomal RNA gene, partial sequence | DQ442540 | 1489 | nuccore | 37480 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces pluricolorescens JCM 4602 | GCA_014650395 | scaffold | ncbi | 37480 |
| 66792 | Streptomyces pluricolorescens strain JCM 4602 | 37480.3 | wgs | patric | 37480 |
GC content
- @ref: 67770
- GC-content: 72
- method: fluorimetric
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.034 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.91 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.668 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.368 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.491 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88 | no |
External links
@ref: 9219
culture collection no.: DSM 40019, ATCC 19798, CBS 550.68, CUB 141, ETH 24329, IFO 12808, ISP 5019, JCM 4302, JCM 4602, NBRC 12808, RIA 1077, BCRC 13657, IFM 1101, LMG 8576, NCIMB 9813, NRRL B-2121, VKM Ac-765
straininfo link
- @ref: 84563
- straininfo: 13503
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9219 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40019) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40019 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 84563 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13503.1 | StrainInfo: A central database for resolving microbial strain identifiers |