Strain identifier
version 8.1 (current version)
General
@ref: 60199
BacDive-ID: 154588
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Weissella confusa CCUG 54486 is a microaerophile, mesophilic bacterium that was isolated from Human drain,51-yr-old man,PTC.
NCBI tax id
- NCBI tax id: 1583
- Matching level: species
doi: 10.13145/bacdive154588.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Weissella
- species: Weissella confusa
- full scientific name: Weissella confusa corrig. (Holzapfel and Kandler 1969) Collins et al. 1994
synonyms
@ref synonym 20215 Lactobacillus coprophilus subsp. confusus 20215 Lactobacillus confusus 20215 Lactobacillus confusa
@ref: 60199
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Leuconostocaceae
genus: Weissella
species: Weissella confusa
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 94.938 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 60199
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 60199
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.991 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 60199
- sample type: Human drain,51-yr-old man,PTC
- sampling date: 2007-03-05
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Fluids | |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Weissella confusa CCUG 54486 | GCA_016465865 | contig | ncbi | 1583 |
| 66792 | Weissella confusa strain CCUG 54486 | 1583.266 | wgs | patric | 1583 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 97.597 | no |
| gram-positive | yes | 95.608 | no |
| anaerobic | no | 89.392 | yes |
| aerobic | no | 95.124 | yes |
| halophile | yes | 93.058 | no |
| spore-forming | no | 95.179 | no |
| thermophile | no | 99.81 | yes |
| glucose-util | yes | 90.259 | no |
| flagellated | no | 98.4 | no |
| glucose-ferment | yes | 90.529 | no |
External links
@ref: 60199
culture collection no.: CCUG 54486
straininfo link
- @ref: 108197
- straininfo: 303105
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 60199 | Curators of the CCUG | https://www.ccug.se/strain?id=54486 | Culture Collection University of Gothenburg (CCUG) (CCUG 54486) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 108197 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID303105.1 |