Strain identifier

BacDive ID: 15446

Type strain: No

Species: Streptomyces olivaceus

Strain Designation: BU 16,11, FD 275

Strain history: KCC S-0066 <-- Y. Okami (NIHJ 111) <-- NRRL B-1125.

NCBI tax ID(s): 47716 (species)

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General

@ref: 10385

BacDive-ID: 15446

DSM-Number: 41536

keywords: genome sequence, 16S sequence, Bacteria, spore-forming

description: Streptomyces olivaceus BU 16 is a spore-forming bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 47716
  • Matching level: species

strain history

@refhistory
10385<- IMET <- G. Bradler <- W. Kurylowicz, NCIB
67770KCC S-0066 <-- Y. Okami (NIHJ 111) <-- NRRL B-1125.

doi: 10.13145/bacdive15446.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces olivaceus
  • full scientific name: Streptomyces olivaceus (Waksman 1923) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces olivaceus

@ref: 10385

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces olivaceus

full scientific name: Streptomyces olivaceus (Waksman 1923) Waksman and Henrici 1948 emend. Nouioui et al. 2018

strain designation: BU 16,11, FD 275

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 92.066

Culture and growth conditions

culture medium

  • @ref: 10385
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
10385positivegrowth28
67770positivegrowth28

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: aerobe
  • confidence: 90.669

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 90.795

compound production

@refcompound
10385vitamin B12
10385olivacein

metabolite production

  • @ref: 67770
  • Chebi-ID: 176843
  • metabolite: vitamin B12
  • production: yes

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184793
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

  • @ref: 10385
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces olivaceus gene for 16S rRNA, partial sequence, strain: NBRC 3724AB1847931477nuccore47716
20218Streptomyces olivaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4066D43997120nuccore47716

Genome sequences

  • @ref: 67770
  • description: Streptomyces olivaceus NRRL B-1125
  • accession: GCA_000716815
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 47716

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes92.066no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.366no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes90.669no
69480spore-formingspore-formingAbility to form endo- or exosporesyes90.795no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno96.5yes
69480flagellatedmotile2+Ability to perform flagellated movementno88no

External links

@ref: 10385

culture collection no.: DSM 41536, ATCC 11626, CBS 355.53, CGMCC AS 4.1392, CUB 507, DSM 41126, DSM 41294, DSM 41434, ETH 14309, ETH 14316, HMGB B 956, IAM W2-9, IFO 3409, IFO 3724, IMET 40351, IMRU 3565, IMRU 3688, INA 8238, JCM 4066, KCC S-0066, NBRC 3409, NBRC 3724, NCIB 8238, NCIB 8509, NIHJ 111, NRRL B-1125, RIA 621, HUT 6061, IFM 1040, PSA 137, BCRC 11873, IFM 1089, KCTC 1368, NCIMB 8238

straininfo link

@refstraininfo
84533125641
84534218660

phages

@refnamestrain numberlink
124042Streptomyces phage S7DSM 41536https://phagedive.dsmz.de/strain/754
124042Streptomyces phage phi8238DSM 41536https://phagedive.dsmz.de/strain/757

literature

  • topic: Phylogeny
  • Pubmed-ID: 3938519
  • title: [Production of vitamin B12 by fermentation].
  • authors: Ogultekin R, Oner M
  • journal: Mikrobiyol Bul
  • year: 1985
  • mesh: Biological Assay, Fermentation, Lactobacillus/growth & development, Species Specificity, Streptomyces/*metabolism, Streptomyces griseus/*metabolism, Vitamin B 12/*biosynthesis
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10385Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41536)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41536
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
84533Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID125641.1StrainInfo: A central database for resolving microbial strain identifiers
84534Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID218660.1StrainInfo: A central database for resolving microbial strain identifiers
124042Dr. Johannes Wittmann, Dr. Clara Rolland, Dr. Lorenz Reimer, Joaquim Sardàhttps://phagedive.dsmz.de/PhageDive