Strain identifier

BacDive ID: 154454

Type strain: No

Species: Bordetella holmesii

NCBI tax ID(s): 35814 (species)

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General

@ref: 59978

BacDive-ID: 154454

keywords: Bacteria, microaerophile, mesophilic

description: Bordetella holmesii CCUG 53681 is a microaerophile, mesophilic bacterium that was isolated from Human blood,20-yr-old man,purulent pericarditis.

NCBI tax id

  • NCBI tax id: 35814
  • Matching level: species

doi: 10.13145/bacdive154454.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella holmesii
  • full scientific name: Bordetella holmesii Weyant et al. 1995

@ref: 59978

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella holmesii

type strain: no

Culture and growth conditions

culture temp

  • @ref: 59978
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 59978
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    59978C14:00.614
    59978C16:03916
    59978C18:0418
    59978C12:0 2OH2.713.178
    59978C12:0 3OH0.313.455
    59978C12:0 ALDE ?1.210.915
    59978C14:0 2OH3.215.205
    59978C14:0 3OH/C16:1 ISO I5.115.485
    59978C16:0 2OH0.317.233
    59978C16:0 aldehyde0.314.949
    59978C16:0 anteiso0.415.717
    59978C16:1 ω7c5.415.819
    59978C17:0 CYCLO3016.888
    59978C18:1 ω9c217.769
    59978C18:2 ω6,9c/C18:0 ANTE3.217.724
    59978C19:0 CYCLO ω9c118.87
    59978C19:1 ω11c/19:1 ω9c0.618.762
    59978unk. 18.846/19:1 ω6c0.518.846
    59978unknown 18.4450.418.445
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
59978--+--+---+----------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
59978---------------------

Isolation, sampling and environmental information

isolation

  • @ref: 59978
  • sample type: Human blood,20-yr-old man,purulent pericarditis
  • sampling date: 2006
  • geographic location: Karlstad
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood
#Infection#Inflammation
#Infection#Patient

External links

@ref: 59978

culture collection no.: CCUG 53681

straininfo link

  • @ref: 108095
  • straininfo: 303431

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
59978Curators of the CCUGhttps://www.ccug.se/strain?id=53681Culture Collection University of Gothenburg (CCUG) (CCUG 53681)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
108095Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID303431.1