Strain identifier
version 8.1 (current version)
General
@ref: 59822
BacDive-ID: 154344
keywords: genome sequence, Bacteria
description: Mycoplasmopsis agassizii CCUG 53180 is a bacterium that was isolated from Tortoise nares,Gopherus agassizii,U Resp T disease.
NCBI tax id
- NCBI tax id: 33922
- Matching level: species
doi: 10.13145/bacdive154344.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Metamycoplasmataceae
- genus: Mycoplasmopsis
- species: Mycoplasmopsis agassizii
- full scientific name: Mycoplasmopsis agassizii (Brown et al. 2001) Gupta et al. 2018
synonyms
- @ref: 20215
- synonym: Mycoplasma agassizii
@ref: 59822
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmoidales
family: Metamycoplasmataceae
genus: Mycoplasma
species: Mycoplasma agassizii
type strain: yes
Isolation, sampling and environmental information
isolation
- @ref: 59822
- sample type: Tortoise nares,Gopherus agassizii,U Resp T disease
- geographic location: Florida
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Amphibia |
| #Infection | #Disease |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycoplasmopsis agassizii ATCC 700616 | GCA_900176265 | contig | ncbi | 33922 |
| 66792 | Mycoplasma agassizii strain ATCC 700616 | 33922.3 | wgs | patric | 33922 |
| 66792 | Mycoplasmopsis agassizii ATCC 700616 | 2585428149 | draft | img | 33922 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 54.098 | no |
| anaerobic | no | 94.86 | no |
| halophile | no | 54.059 | no |
| spore-forming | no | 98.671 | no |
| glucose-util | yes | 91.88 | no |
| motile | no | 93.246 | no |
| flagellated | no | 97.269 | no |
| thermophile | no | 93.988 | no |
| aerobic | no | 96.338 | no |
| glucose-ferment | yes | 83.045 | no |
External links
@ref: 59822
culture collection no.: CCUG 53180, ATCC 700616
straininfo link
- @ref: 108009
- straininfo: 45438
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 59822 | Curators of the CCUG | https://www.ccug.se/strain?id=53180 | Culture Collection University of Gothenburg (CCUG) (CCUG 53180) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 108009 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID45438.1 |