Strain identifier

BacDive ID: 15423

Type strain: Yes

Species: Streptomyces niger

Strain history: KCC A-0158 <-- IFO 13362 <-- SAJ <-- ISP 5302 <-- HACC 146.

NCBI tax ID(s): 66373 (species)

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General

@ref: 9444

BacDive-ID: 15423

DSM-Number: 40302

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces niger DSM 40302 is a mesophilic bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 66373
  • Matching level: species

strain history

@refhistory
9444<- E. B. Shirling, ISP <- M. J. Thirumalachar, HACC 146
67770KCC A-0158 <-- IFO 13362 <-- SAJ <-- ISP 5302 <-- HACC 146.

doi: 10.13145/bacdive15423.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces niger
  • full scientific name: Streptomyces niger (Thirumalachar 1955) Goodfellow et al. 1986

  • synonyms

    • @ref: 20215
    • synonym: Chainia nigra

@ref: 9444

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces niger

full scientific name: Streptomyces niger (Thirumalachar 1955) Goodfellow et al. 1986 emend. Nouioui et al. 2018

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 9444
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9444positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6)

Safety information

risk assessment

  • @ref: 9444
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces niger strain CGMCC 4.1748 16S ribosomal RNA gene, partial sequenceHQ2444531402ena66373
20218Streptomyces niger 16S rRNA gene, type strain DSM 43049TAJ6216071498ena66373
20218Streptomyces niger gene for 16S ribosomal RNA, partial sequence, strain: JCM 3158D43980121ena66373
20218Streptomyces niger gene for 16S rRNA, partial sequence, strain: NBRC 13362AB1843521480ena66373
20218Streptomyces niger gene for 16S rRNA, partial sequence, strain: NBRC 13902AB1845431471ena66373

Genome sequences

  • @ref: 67770
  • description: Streptomyces niger NRRL B-3857
  • accession: GCA_000718305
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 66373

GC content

  • @ref: 67770
  • GC-content: 71.7
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.375no
flagellatedno97.024no
gram-positiveyes88.183no
anaerobicno98.92no
halophileno90.661no
spore-formingyes95.395no
thermophileno96.539yes
glucose-utilyes90.38no
aerobicyes91.346no
glucose-fermentno89.057no

External links

@ref: 9444

culture collection no.: DSM 40302, ATCC 17756, CBS 230.65, CBS 663.72, DSM 43049, HACC 146, IFO 13362, ISP 5302, JCM 3158, KCC A-0158, BCRC 11877, CGMCC 4.1748, CMI 112787, IFO 13902, NBIMCC 495, NBRC 13362, NBRC 13902, NCIMB 10992, NRRL B-3857, PCM 2305, RIA 1323, VKM Ac-1736

straininfo link

  • @ref: 84511
  • straininfo: 41988

literature

  • topic: Enzymology
  • Pubmed-ID: 27189123
  • title: Quinovosamycins: new tunicamycin-type antibiotics in which the alpha, beta-1'',11'-linked N-acetylglucosamine residue is replaced by N-acetylquinovosamine.
  • authors: Price NP, Labeda DP, Naumann TA, Vermillion KE, Bowman MJ, Berhow MA, Metcalf WW, Bischoff KM
  • journal: J Antibiot (Tokyo)
  • DOI: 10.1038/ja.2016.49
  • year: 2016
  • mesh: Acetylglucosamine/chemistry, Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, Enzyme Inhibitors/chemistry/isolation & purification/*pharmacology, Glucosamine/analogs & derivatives/chemistry, Streptomyces/genetics/*metabolism, Tunicamycin/chemistry/isolation & purification/*pharmacology
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9444Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40302)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40302
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
84511Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41988.1StrainInfo: A central database for resolving microbial strain identifiers