Strain identifier
BacDive ID: 15421
Type strain: 
Species: Streptomyces nashvillensis
Strain Designation: V-8
Strain history: KCC S-0498 <-- IFO 13064 <-- SAJ <-- ISP 5314 <-- I. McVeigh V-8.
NCBI tax ID(s): 67334 (species)
version 8.1 (current version)
General
@ref: 9452
BacDive-ID: 15421
DSM-Number: 40314
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces nashvillensis V-8 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 67334
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9452 | <- E.B. Shirling, ISP <- McVeigh, Vanderbilt Univ., V-8 <- NRRL |
| 67770 | KCC S-0498 <-- IFO 13064 <-- SAJ <-- ISP 5314 <-- I. McVeigh V-8. |
doi: 10.13145/bacdive15421.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces nashvillensis
- full scientific name: Streptomyces nashvillensis McVeigh and Reyes 1961 (Approved Lists 1980)
@ref: 9452
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces nashvillensis
full scientific name: Streptomyces nashvillensis McVeigh and Reyes 1961
strain designation: V-8
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.44 | |
| 69480 | 100 | positive |
multimedia
- @ref: 9452
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40314.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9452 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9452 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9452 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 98 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 9452 | soil | ||||
| 67770 | Soil | Nashville, TN | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9452
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces nashvillensis gene for 16S rRNA, partial sequence | AB122738 | 564 | ena | 67334 |
| 20218 | Streptomyces nashvillensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4498 | D44190 | 120 | ena | 67334 |
| 20218 | Streptomyces nashvillensis gene for 16S rRNA, partial sequence, strain: NBRC 13064 | AB184286 | 1477 | ena | 67334 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces tanashiensis JCM 4498 | GCA_014650095 | scaffold | ncbi | 67367 |
| 66792 | Streptomyces nashvillensis strain JCM 4498 | 67334.3 | wgs | patric | 67334 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 98 | no |
| flagellated | no | 96.886 | no |
| gram-positive | yes | 87.363 | no |
| anaerobic | no | 99.407 | no |
| aerobic | yes | 93.356 | no |
| halophile | no | 95.566 | no |
| spore-forming | yes | 92.67 | no |
| glucose-util | yes | 89.044 | no |
| thermophile | no | 99.236 | yes |
| motile | no | 93.957 | no |
| glucose-ferment | no | 87.364 | no |
External links
@ref: 9452
culture collection no.: DSM 40314, ATCC 25476, CBS 886.69, IFO 13064, ISP 5314, NBRC 13064, NRRL B-2606, RIA 1256, JCM 4498, BCRC 13625, CGMCC 4.1741, VKM Ac-1766
straininfo link
- @ref: 84509
- straininfo: 389272
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 27209413 | Streptomyces xinjiangensis sp. nov., an actinomycete isolated from Lop Nur region. | Cheng C, Li YQ, Asem MD, Lu CY, Shi XH, Chu X, Zhang WQ, Di An D, Li WJ | Arch Microbiol | 10.1007/s00203-016-1234-4 | 2016 | Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition/genetics, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Peptidoglycan/genetics, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification | Transcriptome |
| Phylogeny | 35258449 | Characterization of Streptomyces nymphaeiformis sp. nov., and its taxonomic relatedness to other polyhydroxybutyrate-degrading streptomycetes. | Hix GR, Khan MS, Miller MT, Napier EC, O'Brien AL, White RP, Baron SF | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005266 | 2022 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/genetics | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9452 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40314) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40314 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84509 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389272.1 | StrainInfo: A central database for resolving microbial strain identifiers |