Strain identifier
BacDive ID: 153925
Type strain: 
Species: Aggregatibacter actinomycetemcomitans
NCBI tax ID(s): 714 (species)
version 9.1 (current version)
General
@ref: 59275
BacDive-ID: 153925
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, Gram-negative
description: Aggregatibacter actinomycetemcomitans CCUG 51669 is a microaerophile, Gram-negative bacterium that was isolated from Human abscess.
NCBI tax id
- NCBI tax id: 714
- Matching level: species
doi: 10.13145/bacdive153925.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Aggregatibacter
- species: Aggregatibacter actinomycetemcomitans
- full scientific name: Aggregatibacter actinomycetemcomitans (Klinger 1912) Nørskov-Lauritsen and Kilian 2006
synonyms
@ref synonym 20215 Bacterium actinomycetemcomitans 20215 Haemophilus actinomycetemcomitans 20215 Actinobacillus actinomycetemcomitans
@ref: 59275
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Aggregatibacter
species: Aggregatibacter actinomycetemcomitans
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.582
Culture and growth conditions
culture temp
- @ref: 59275
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 59275
- oxygen tolerance: microaerophile
spore formation
- @ref: 69480
- spore formation: no
- confidence: 93.42
Isolation, sampling and environmental information
isolation
- @ref: 59275
- sample type: Human abscess
- sampling date: 1956
- geographic location: Copenhagen
- country: Denmark
- origin.country: DNK
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Other | #Abscess |
| #Infection | #Patient |
Sequence information
16S sequences
- @ref: 124043
- description: Aggregatibacter actinomycetemcomitans partial 16S rRNA gene, strain HG3908/HK961/CCUG 51669, serovar E'
- accession: FN547980
- length: 1210
- database: nuccore
- NCBI tax ID: 714
Genome sequences
- @ref: 66792
- description: Aggregatibacter actinomycetemcomitans strain HK_961
- accession: 714.287
- assembly level: wgs
- database: patric
- NCBI tax ID: 714
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.582 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.093 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.42 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 88.593 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88.988 | no |
External links
@ref: 59275
culture collection no.: CCUG 51669
straininfo link
- @ref: 107651
- straininfo: 303004
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 59275 | Curators of the CCUG | https://www.ccug.se/strain?id=51669 | Culture Collection University of Gothenburg (CCUG) (CCUG 51669) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 107651 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID303004.1 | |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |