Strain identifier

BacDive ID: 15389

Type strain: Yes

Species: Streptomyces luteogriseus

Strain Designation: C-4657

Strain history: KCC S-0786 <-- IFO 13402 <-- SAJ <-- ISP 5483 <-- ATCC 15072 <-- Bristol Labs.; BA 4657.

NCBI tax ID(s): 68233 (species)

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General

@ref: 9576

BacDive-ID: 15389

DSM-Number: 40483

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces luteogriseus C-4657 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from Soil, alfalfa field.

NCBI tax id

  • NCBI tax id: 68233
  • Matching level: species

strain history

@refhistory
9576<- E.B. Shirling, ISP <- ATCC <- Bristol Labs., C-4657
67770KCC S-0786 <-- IFO 13402 <-- SAJ <-- ISP 5483 <-- ATCC 15072 <-- Bristol Labs.; BA 4657.

doi: 10.13145/bacdive15389.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces luteogriseus
  • full scientific name: Streptomyces luteogriseus Schmitz et al. 1964 (Approved Lists 1980)

@ref: 9576

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces luteogriseus

full scientific name: Streptomyces luteogriseus Schmitz et al. 1964

strain designation: C-4657

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.739
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9576GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9576ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9576positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9576peliomycin
67770Peliomycin

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil, alfalfa field
  • geographic location: Orly
  • country: France
  • origin.country: FRA
  • continent: Europe

taxonmaps

  • @ref: 69479
  • File name: preview.99_19859.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_10115;97_12200;98_15009;99_19859&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB920581
  • Sequence Identity:
  • Total samples: 96
  • soil counts: 54
  • aquatic counts: 8
  • animal counts: 25
  • plant counts: 9

Safety information

risk assessment

  • @ref: 9576
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces luteogriseus partial 16S rRNA gene, strain ISP 5483AJ3994901448ena68233
20218Streptomyces luteogriseus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4786D44361121ena68233
20218Streptomyces luteogriseus gene for 16S rRNA, partial sequence, strain: NBRC 13402AB1843791435ena68233
20218Streptomyces sp. NTHn3 gene for 16S ribosomal RNA, partial sequenceAB9205811284ena1571717

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces luteogriseus DSM 40483GCA_014205055contigncbi68233
66792Streptomyces luteogriseus strain DSM 4048368233.3wgspatric68233
66792Streptomyces luteogriseus DSM 404832870774733draftimg68233

GC content

  • @ref: 67770
  • GC-content: 72.7
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes89.021no
anaerobicno98.968no
halophileno92.278no
spore-formingyes96.04no
glucose-utilyes90.917no
thermophileno97.547yes
flagellatedno97.915no
motileno92.933no
aerobicyes90.797no
glucose-fermentno90.024no

External links

@ref: 9576

culture collection no.: DSM 40483, ATCC 15072, CBS 703.72, IFO 13402, ISP 5483, JCM 4786, NBRC 13402, RIA 1363, BCRC 16210, CGMCC 4.2001, IFM 1203, NRRL B-12422, VKM Ac-1913

straininfo link

  • @ref: 84479
  • straininfo: 45577

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28141499Streptomyces jeddahensis sp. nov., an oleaginous bacterium isolated from desert soil.Rottig A, Atasayar E, Meier-Kolthoff JP, Sproer C, Schumann P, Schauer J, Steinbuchel AInt J Syst Evol Microbiol10.1099/ijsem.0.0018392017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Saudi Arabia, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31410700Streptomyces tibetensis sp. nov., an actinomycete isolated from the Tibetan Plateau.Li J, Wang L, Ye Z, Lu L, Li YAntonie Van Leeuwenhoek10.1007/s10482-019-01315-22019Actinobacteria/classification/*genetics, Base Composition/genetics, DNA, Bacterial/genetics, Multilocus Sequence Typing, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/classification/*genetics, Tibet

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9576Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40483)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40483
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84479Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45577.1StrainInfo: A central database for resolving microbial strain identifiers