Strain identifier

BacDive ID: 153888

Type strain: Yes

Species: Empedobacter falsenii

NCBI tax ID(s): 343874 (species)

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General

@ref: 59235

BacDive-ID: 153888

keywords: Bacteria, aerobe

description: Empedobacter falsenii CCUG 51536 is an aerobe bacterium that was isolated from Human surgical wound.

NCBI tax id

  • NCBI tax id: 343874
  • Matching level: species

doi: 10.13145/bacdive153888.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Empedobacter
  • species: Empedobacter falsenii
  • full scientific name: Empedobacter falsenii (Kämpfer et al. 2006) Zhang et al. 2014

  • synonyms

    • @ref: 20215
    • synonym: Wautersiella falsenii

@ref: 59235

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Wautersiella

species: Wautersiella falsenii

type strain: yes

Morphology

colony morphology

  • @ref: 59235
  • incubation period: 1-2 days

Physiology and metabolism

oxygen tolerance

  • @ref: 59235
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose-builds acid from
6837717306maltose+builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea+hydrolysis
6837727897tryptophan+energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68377tryptophan deaminase+4.1.99.1
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase+
68377urease+3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase+3.5.2.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
59235-+++-+++--++---+----

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
59235++-+--+++--++

Isolation, sampling and environmental information

isolation

  • @ref: 59235
  • sample type: Human surgical wound
  • sampling date: 2001
  • geographic location: St-Luc
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Wound
#Infection#Patient

External links

@ref: 59235

culture collection no.: CCUG 51536, CIP 108861

straininfo link

  • @ref: 107621
  • straininfo: 297352

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17012555Description of Wautersiella falsenii gen. nov., sp. nov., to accommodate clinical isolates phenotypically resembling members of the genera Chryseobacterium and Empedobacter.Kampfer P, Avesani V, Janssens M, Charlier J, De Baere T, Vaneechoutte MInt J Syst Evol Microbiol10.1099/ijs.0.64393-02006Bacterial Typing Techniques, Base Composition, Chryseobacterium/classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Flavobacteriaceae Infections/*microbiology, Genes, rRNA, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Genetic, RNA, Ribosomal, 16S/genetics, RNA, Transfer/genetics, Sequence Analysis, DNA, Species SpecificityEnzymology
Phylogeny24844262Description of Chishuiella changwenlii gen. nov., sp. nov., isolated from freshwater, and transfer of Wautersiella falsenii to the genus Empedobacter as Empedobacter falsenii comb. nov.Zhang RG, Tan X, Liang Y, Meng TY, Liang HZ, Lv JInt J Syst Evol Microbiol10.1099/ijs.0.063115-02014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Fresh Water/*microbiology, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
59235Curators of the CCUGhttps://www.ccug.se/strain?id=51536Culture Collection University of Gothenburg (CCUG) (CCUG 51536)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
107621Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID297352.1