Strain identifier
BacDive ID: 153828
Type strain:
Species: Staphylococcus hominis subsp. novobiosepticus
NCBI tax ID(s): 145393 (subspecies)
version 8.1 (current version)
General
@ref: 59136
BacDive-ID: 153828
keywords: Bacteria, microaerophile, mesophilic
description: Staphylococcus hominis subsp. novobiosepticus CCUG 51297 is a microaerophile, mesophilic bacterium that was isolated from Human urine,71-yr-old man.
NCBI tax id
- NCBI tax id: 145393
- Matching level: subspecies
doi: 10.13145/bacdive153828.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus hominis subsp. novobiosepticus
- full scientific name: Staphylococcus hominis subsp. novobiosepticus Kloos et al. 1998
@ref: 59136
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus hominis subsp. novobiosepticus
type strain: no
Culture and growth conditions
culture temp
- @ref: 59136
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 59136
- oxygen tolerance: microaerophile
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | + | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | + | fermentation |
68379 | 17716 | lactose | + | fermentation |
68379 | 17992 | sucrose | + | fermentation |
68379 | 28087 | glycogen | - | fermentation |
68375 | 16199 | urea | + | hydrolysis |
68375 | 29016 | arginine | - | hydrolysis |
68375 | 18257 | ornithine | - | degradation |
68375 | 4853 | esculin | - | hydrolysis |
68375 | 17634 | D-glucose | + | fermentation |
68375 | 15824 | D-fructose | + | fermentation |
68375 | 16024 | D-mannose | - | fermentation |
68375 | 17306 | maltose | + | fermentation |
68375 | 17716 | lactose | + | fermentation |
68375 | 27082 | trehalose | - | fermentation |
68375 | 16899 | D-mannitol | - | fermentation |
68375 | 16634 | raffinose | - | fermentation |
68375 | 16988 | D-ribose | - | fermentation |
68375 | 17057 | cellobiose | - | fermentation |
68375 | 17632 | nitrate | + | reduction |
68375 | 17992 | sucrose | + | fermentation |
68375 | 59640 | N-acetylglucosamine | - | fermentation |
68375 | 32528 | turanose | - | fermentation |
68375 | 22599 | arabinose | - | fermentation |
68378 | 17634 | D-glucose | - | builds acid from |
68378 | 15824 | D-fructose | + | builds acid from |
68378 | 16024 | D-mannose | + | builds acid from |
68378 | 17306 | maltose | - | builds acid from |
68378 | 17716 | lactose | + | builds acid from |
68378 | 27082 | trehalose | + | builds acid from |
68378 | 16899 | D-mannitol | - | builds acid from |
68378 | 17151 | xylitol | - | builds acid from |
68378 | 28053 | melibiose | - | builds acid from |
68378 | 17632 | nitrate | - | reduction |
68378 | 16634 | raffinose | + | builds acid from |
68378 | 65327 | D-xylose | - | builds acid from |
68378 | 17992 | sucrose | - | builds acid from |
68378 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
68378 | 59640 | N-acetylglucosamine | - | builds acid from |
68378 | 29016 | arginine | + | hydrolysis |
68378 | 16199 | urea | - | hydrolysis |
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | - | builds acid from |
68381 | 27082 | trehalose | - | builds acid from |
68381 | 16634 | raffinose | - | builds acid from |
68381 | 17992 | sucrose | - | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 606565 | hippurate | + | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | + | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | + | hydrolysis |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant |
---|---|---|---|---|---|---|
68375 | 28368 | novobiocin | yes | yes | 1.8 µg | |
68378 | lysostaphin | yes | yes |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68378 | 15688 | acetoin | no |
68375 | 15688 | acetoin | no |
68381 | 15688 | acetoin | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test |
---|---|---|---|
68378 | 15688 | acetoin | - |
68375 | 15688 | acetoin | - |
68381 | 15688 | acetoin | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68381 | urease | + | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | - | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
68378 | urease | - | 3.5.1.5 |
68378 | arginine dihydrolase | + | 3.5.3.6 |
68378 | alkaline phosphatase | + | 3.1.3.1 |
68375 | beta-glucuronidase | - | 3.2.1.31 |
68375 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68375 | alkaline phosphatase | - | 3.1.3.1 |
68375 | L-arginine arylamidase | - | |
68375 | beta-galactosidase | - | 3.2.1.23 |
68375 | beta-glucosidase | - | 3.2.1.21 |
68375 | ornithine decarboxylase | - | 4.1.1.17 |
68375 | arginine dihydrolase | - | 3.5.3.6 |
68375 | urease | + | 3.5.1.5 |
68379 | catalase | - | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | + | 3.5.1.B15 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 59136 C16:0 1.4 16 59136 C18:0 5.2 18 59136 C20:0 1.7 20 59136 C13:0 iso 0.4 12.612 59136 C14:0 ISO 3.7 13.618 59136 C15:0 ANTEISO 47.3 14.711 59136 C15:0 ISO 13.6 14.621 59136 C16:0 iso 1.5 15.626 59136 C17:0 anteiso 5.7 16.722 59136 C17:0 iso 4.5 16.629 59136 C18:0 ISO 1.8 17.632 59136 C18:1 ω9c 1.1 17.769 59136 C18:2 ω6,9c/C18:0 ANTE 2.6 17.724 59136 C19:0 ANTEISO 3.2 18.729 59136 C19:0 ISO 4.7 18.633 59136 C20:2 ω6,9c 1.7 19.735 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
59136 | + | + | + | + | - | - | - | - | - | + | - | - | + | - | - | - | + | + | + | - | - |
API ID32STA
@ref | URE | ADH Arg | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | NIT | VP | beta GAL | ArgA | PAL | PyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
59136 | + | - | - | - | + | + | - | + | + | - | - | - | - | - | + | - | - | - | - | - | - | + | - | - | - | - |
API STA
@ref | GLU | FRU | MNE | MAL | LAC | TRE | MAN | XLT | MEL | NIT | PAL | VP | RAF | XYL | SAC | MDG | NAG | ADH | URE | LSTR |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
59136 | - | + | + | - | + | + | - | - | - | - | + | - | + | - | - | + | - | + | - | + |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
59136 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | + | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 59136
- sample type: Human urine,71-yr-old man
- sampling date: 2005-06-01
- geographic location: Skövde
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host Body Product | #Fluids | #Urine |
#Infection | #Patient |
External links
@ref: 59136
culture collection no.: CCUG 51297
straininfo link
- @ref: 107567
- straininfo: 215047
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
59136 | Curators of the CCUG | https://www.ccug.se/strain?id=51297 | Culture Collection University of Gothenburg (CCUG) (CCUG 51297) | |
68375 | Automatically annotated from API ID32STA | |||
68378 | Automatically annotated from API STA | |||
68379 | Automatically annotated from API Coryne | |||
68381 | Automatically annotated from API rID32STR | |||
107567 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID215047.1 |