Strain identifier

BacDive ID: 153809

Type strain: No

Species: Weissella confusa

NCBI tax ID(s): 1583 (species)

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General

@ref: 59107

BacDive-ID: 153809

keywords: genome sequence, Bacteria, microaerophile, mesophilic

description: Weissella confusa CCUG 51220 is a microaerophile, mesophilic bacterium that was isolated from Human blood,62-yr-old man.

NCBI tax id

  • NCBI tax id: 1583
  • Matching level: species

doi: 10.13145/bacdive153809.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Weissella
  • species: Weissella confusa
  • full scientific name: Weissella confusa corrig. (Holzapfel and Kandler 1969) Collins et al. 1994

  • synonyms

    @refsynonym
    20215Lactobacillus coprophilus subsp. confusus
    20215Lactobacillus confusus
    20215Lactobacillus confusa

@ref: 59107

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Weissella

species: Weissella confusa

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.211
69480100positive

Culture and growth conditions

culture temp

  • @ref: 59107
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 59107
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69480no99.991
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    59107C14:04.814
    59107C16:027.816
    59107C18:012.118
    59107C16:1 ω7c3.715.819
    59107C18:1 ω9c16.817.769
    59107C18:2 ω6,9c/C18:0 ANTE30.417.724
    59107C19:0 CYCLO ω9c4.518.87
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
59107-+---+----------+++------+--+---

Isolation, sampling and environmental information

isolation

  • @ref: 59107
  • sample type: Human blood,62-yr-old man
  • sampling date: 2005-05-19
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Weissella confusa CCUG 51220GCA_004766115contigncbi1583
66792Weissella confusa strain CCUG 512201583.269wgspatric1583
66792Weissella confusa strain CCUG 512201583.160wgspatric1583
66792Weissella confusa CCUG 512202858077623draftimg1583
66792Weissella confusa CCUG 51220GCA_016465935contigncbi1583

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno97.723no
gram-positiveyes95.887no
anaerobicno90.693no
aerobicno94.654yes
halophileyes94.168no
spore-formingno96.534no
thermophileno99.779yes
glucose-utilyes90.348no
flagellatedno98.723no
glucose-fermentyes89.811no

External links

@ref: 59107

culture collection no.: CCUG 51220

straininfo link

  • @ref: 107552
  • straininfo: 214980

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
59107Curators of the CCUGhttps://www.ccug.se/strain?id=51220Culture Collection University of Gothenburg (CCUG) (CCUG 51220)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
107552Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID214980.1