Strain identifier

BacDive ID: 153533

Type strain: Yes

Species: Leeuwenhoekiella aequorea

NCBI tax ID(s): 283736 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 58739

BacDive-ID: 153533

keywords: genome sequence, Bacteria, Gram-negative

description: Leeuwenhoekiella aequorea CCUG 50091 is a Gram-negative bacterium that was isolated from Seawater.

NCBI tax id

  • NCBI tax id: 283736
  • Matching level: species

doi: 10.13145/bacdive153533.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Leeuwenhoekiella
  • species: Leeuwenhoekiella aequorea
  • full scientific name: Leeuwenhoekiella aequorea Nedashkovskaya et al. 2005

@ref: 58739

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Leeuwenhoekiella

species: Leeuwenhoekiella aequorea

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.949

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.995
69481no100

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    58739C15:01.315
    58739C16:0116
    58739C15:0 ANTEISO3.114.711
    58739C15:0 ISO23.714.621
    58739C15:0 ISO 3OH2.816.135
    58739C15:1 ANTEISO A0.414.526
    58739C15:1 ISO G11.214.441
    58739C16:0 iso0.515.626
    58739C16:1 ω7c3.615.819
    58739C16:1 ω7c/C15:0 ISO 2OH4.515.85
    58739C16:1 ω9c DMA1.116.242
    58739C17:0 iso0.716.629
    58739C17:0 iso 3OH14.718.161
    58739C17:1 ISO I/C16:0 DMA1.916.481
    58739C17:1 ω9c ISO20.316.416
    58739C19:0 ISO0.318.633
    58739Unidentified213.659
    58739Unidentified0.719.749
    58739unknown 13.5665.513.566
    58739unknown 16.5800.716.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

  • @ref: 58739
  • sample type: Seawater
  • country: Antarctica
  • origin.country: ATA
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leeuwenhoekiella aequorea LMG 22550GCA_004104375contigncbi283736
66792Leeuwenhoekiella aequorea strain LMG 22550283736.5wgspatric283736
66792Leeuwenhoekiella aequorea LMG 225502894321899draftimg283736
66792Leeuwenhoekiella aequorea LMG 225502772190911draftimg283736

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno85.399no
gram-positiveno96.843no
anaerobicno99.693no
halophileno50.668no
spore-formingno95.359no
glucose-utilyes87.011no
flagellatedno94.058no
aerobicyes90.031no
thermophileno99.205no
glucose-fermentno91.114no

External links

@ref: 58739

culture collection no.: CCUG 50091, CIP 108760, LMG 22550

straininfo link

  • @ref: 107322
  • straininfo: 21667

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15879230Reclassification of [Cytophaga] marinoflava Reichenbach 1989 as Leeuwenhoekiella marinoflava gen. nov., comb. nov. and description of Leeuwenhoekiella aequorea sp. nov.Nedashkovskaya OI, Vancanneyt M, Dawyndt P, Engelbeen K, Vandemeulebroecke K, Cleenwerck I, Hoste B, Mergaert J, Tan TL, Frolova GM, Mikhailov VV, Swings JInt J Syst Evol Microbiol10.1099/ijs.0.63410-02005Animals, Antarctic Regions, Bacterial Typing Techniques, Cytophaga/*classification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/cytology/*isolation & purification/physiology, Genes, rRNA, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Strongylocentrotus/*microbiology, Water MicrobiologyGenetics
Phylogeny25736409Leeuwenhoekiella polynyae sp. nov., isolated from a polynya in western Antarctica.Si OJ, Kim SJ, Jung MY, Choi SB, Kim JG, Kim SG, Roh SW, Lee S, Rhee SKInt J Syst Evol Microbiol10.1099/ijs.0.0001602015Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
58739Curators of the CCUGhttps://www.ccug.se/strain?id=50091Culture Collection University of Gothenburg (CCUG) (CCUG 50091)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
107322Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID21667.1