Strain identifier
BacDive ID: 153316
Type strain: 
Species: Streptococcus agalactiae
NCBI tax ID(s): 1105271 (strain), 1311 (species)
version 8.1 (current version)
General
@ref: 58466
BacDive-ID: 153316
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Streptococcus agalactiae CCUG 49100 is a microaerophile, mesophilic bacterium that was isolated from Human synovial fluid,48-yr-old male.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1105271 | strain |
| 1311 | species |
doi: 10.13145/bacdive153316.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus agalactiae
- full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptococcus difficile 20215 Streptococcus difficilis
@ref: 58466
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus agalactiae
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.734 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 58466
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 58466
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.993 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 58466
- sample type: Human synovial fluid,48-yr-old male
- sampling date: 1998-01-23
- geographic location: Lidköping
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Fluids | #Synovial fluid |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus agalactiae CCUG 49100 | GCA_000310785 | contig | ncbi | 1105271 |
| 66792 | Streptococcus agalactiae CCUG 49100 | 1105271.3 | wgs | patric | 1105271 |
| 66792 | Streptococcus agalactiae CCUG 49100 | 2706794506 | draft | img | 1105271 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 97.434 | no |
| flagellated | no | 98.304 | no |
| gram-positive | yes | 94.21 | no |
| anaerobic | no | 95.454 | yes |
| aerobic | no | 95.013 | yes |
| halophile | yes | 88.789 | no |
| spore-forming | no | 94.769 | no |
| glucose-util | yes | 89.786 | no |
| thermophile | no | 99.5 | yes |
| glucose-ferment | yes | 90.021 | no |
External links
@ref: 58466
culture collection no.: CCUG 49100
straininfo link
- @ref: 107139
- straininfo: 215253
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 58466 | Curators of the CCUG | https://www.ccug.se/strain?id=49100 | Culture Collection University of Gothenburg (CCUG) (CCUG 49100) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 107139 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID215253.1 |