Strain identifier
BacDive ID: 153316
Type strain: 
Species: Streptococcus agalactiae
NCBI tax ID(s): 1105271 (strain), 1311 (species)
version 9.3 (current version)
General
@ref: 58466
BacDive-ID: 153316
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Streptococcus agalactiae CCUG 49100 is a microaerophile, mesophilic bacterium that was isolated from Human synovial fluid,48-yr-old male.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1105271 | strain |
| 1311 | species |
doi: 10.13145/bacdive153316.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus agalactiae
- full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptococcus difficile 20215 Streptococcus difficilis
@ref: 58466
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus agalactiae
type strain: no
Culture and growth conditions
culture temp
- @ref: 58466
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 58466 | microaerophile | |
| 125439 | microaerophile | 94.5 |
Isolation, sampling and environmental information
isolation
- @ref: 58466
- sample type: Human synovial fluid,48-yr-old male
- sampling date: 1998-01-23
- geographic location: Lidköping
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Fluids | #Synovial fluid |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus agalactiae CCUG 49100 | GCA_000310785 | contig | ncbi | 1105271 |
| 66792 | Streptococcus agalactiae CCUG 49100 | 1105271.3 | wgs | patric | 1105271 |
| 66792 | Streptococcus agalactiae CCUG 49100 | 2706794506 | draft | img | 1105271 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.251 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.257 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.528 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.771 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.913 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 81.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 68.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 87.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 94.5 |
External links
@ref: 58466
culture collection no.: CCUG 49100
straininfo link
- @ref: 107139
- straininfo: 215253
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 58466 | Curators of the CCUG | https://www.ccug.se/strain?id=49100 | Culture Collection University of Gothenburg (CCUG) (CCUG 49100) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 107139 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID215253.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |