Strain identifier
BacDive ID: 152919
Type strain: 
Species: Polaribacter butkevichii
Strain history: <- KMM <- OI Nedashkovskaya, KMM, Russia
NCBI tax ID(s): 218490 (species)
version 8.1 (current version)
General
@ref: 57946
BacDive-ID: 152919
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, rod-shaped
description: Polaribacter butkevichii CCUG 48005 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from From sea water in Amursky Bay.
NCBI tax id
- NCBI tax id: 218490
- Matching level: species
strain history
- @ref: 67771
- history: <- KMM <- OI Nedashkovskaya, KMM, Russia
doi: 10.13145/bacdive152919.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Polaribacter
- species: Polaribacter butkevichii
- full scientific name: Polaribacter butkevichii Nedashkovskaya et al. 2006
@ref: 57946
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Polaribacter
species: Polaribacter butkevichii
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain | confidence |
|---|---|---|---|---|
| 67771 | rod-shaped | no | ||
| 67771 | negative | |||
| 69480 | negative | 99.993 |
colony morphology
- @ref: 57946
- incubation period: 2 days
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 57946 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 21-23 | psychrophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 57946 | aerobe |
| 67771 | aerobe |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.99 |
| 69481 | no | 100 |
observation
- @ref: 67771
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
- @ref: 67771
- sample type: From sea water in Amursky Bay
- geographic location: Sea of Japan
- country: Russia
- origin.country: RUS
- continent: Asia
Sequence information
16S sequences
- @ref: 67771
- description: Bacteroidetes bacterium KMM 3938 16S ribosomal RNA gene, partial sequence
- accession: AY189722
- length: 1433
- database: ena
- NCBI tax ID: 218490
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Polaribacter butkevichii KCTC 12100 | GCA_002954605 | scaffold | ncbi | 218490 |
| 66792 | Polaribacter butkevichii strain KCTC 12100 | 218490.3 | wgs | patric | 218490 |
| 66792 | Polaribacter butkevichii KCTC 12100 | 2895256602 | draft | img | 218490 |
GC content
- @ref: 67771
- GC-content: 32.4
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 94.013 | yes |
| gram-positive | no | 97.388 | yes |
| anaerobic | no | 99.23 | yes |
| aerobic | yes | 84.389 | yes |
| halophile | no | 87.486 | no |
| spore-forming | no | 96.198 | no |
| glucose-util | yes | 86.284 | no |
| thermophile | no | 99.391 | no |
| motile | no | 87.738 | no |
| glucose-ferment | no | 86.884 | no |
External links
@ref: 57946
culture collection no.: CCUG 48005, KMM 3938, KCTC 12100, KCTC 23228
straininfo link
- @ref: 106806
- straininfo: 99601
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16235024 | Polaribacter butkevichii sp. nov., a novel marine mesophilic bacterium of the family Flavobacteriaceae. | Nedashkovskaya OI, Kim SB, Lysenko AM, Kalinovskaya NI, Mikhailov VV, Kim IS, Bae KS | Curr Microbiol | 10.1007/s00284-005-0105-z | 2005 | Aerobiosis, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/cytology/isolation & purification/physiology, Gentian Violet, Growth Substances/pharmacology, Locomotion, Oxidoreductases/analysis, Peroxidase/analysis, Phenazines, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/pharmacology, Temperature, Water Microbiology | Enzymology |
| Phylogeny | 23710058 | Polaribacter sejongensis sp. nov., isolated from Antarctic soil, and emended descriptions of the genus Polaribacter, Polaribacter butkevichii and Polaribacter irgensii. | Kim BC, Oh HW, Kim H, Park DS, Hong SG, Lee HK, Bae KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.047100-0 | 2013 | Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 29303693 | Polaribacter staleyi sp. nov., a polysaccharide-degrading marine bacterium isolated from the red alga Ahnfeltia tobuchiensis. | Nedashkovskaya OI, Kim SG, Balabanova LA, Zhukova NV, Bakunina IY, Mikhailov VV | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002554 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, Polysaccharides, RNA, Ribosomal, 16S/genetics, Rhodophyta/*microbiology, Russia, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 57946 | Curators of the CCUG | https://www.ccug.se/strain?id=48005 | Culture Collection University of Gothenburg (CCUG) (CCUG 48005) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 106806 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID99601.1 |