Strain identifier
version 8.1 (current version)
General
@ref: 57753
BacDive-ID: 152759
keywords: Bacteria, aerobe, mesophilic
description: Citrobacter freundii CCUG 47561 is an aerobe, mesophilic bacterium that was isolated from Sediment.
NCBI tax id
- NCBI tax id: 546
- Matching level: species
doi: 10.13145/bacdive152759.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Citrobacter
- species: Citrobacter freundii
- full scientific name: Citrobacter freundii (Braak 1928) Werkman and Gillen 1932 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bethesda ballerupensis 20215 Bacterium freundii
@ref: 57753
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Citrobacter
species: Citrobacter freundii
type strain: no
Culture and growth conditions
culture temp
- @ref: 57753
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 57753
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68374 | 18257 | ornithine | + | degradation |
68374 | 29016 | arginine | + | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | + | builds acid from |
68374 | Potassium 5-ketogluconate | + | builds acid from | |
68374 | 16899 | D-mannitol | + | builds acid from |
68374 | 17306 | maltose | + | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | - | energy source |
68374 | 17634 | D-glucose | + | builds acid from |
68374 | 17992 | sucrose | + | builds acid from |
68374 | 30849 | L-arabinose | + | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | + | builds acid from |
68374 | 62345 | L-rhamnose | + | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | + | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | + | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | + | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | + | 3.5.3.6 |
68374 | ornithine decarboxylase | + | 4.1.1.17 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 57753 C12:0 3.7 12 57753 C13:0 0.3 13 57753 C14:0 7.4 14 57753 C15:0 1.7 15 57753 C16:0 28.6 16 57753 C17:0 0.9 17 57753 C18:0 0.3 18 57753 C14:0 3OH/C16:1 ISO I 7 15.485 57753 C16:1 ω7c 24.1 15.819 57753 C17:0 CYCLO 6.2 16.888 57753 C18:1 ω7c /12t/9t 18.1 17.824 57753 C18:2 ω6,9c/C18:0 ANTE 0.5 17.724 57753 Unidentified 0.4 13.939 57753 Unidentified 0.2 15.179 57753 unknown 14.503 0.6 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
57753 | + | + | - | - | - | + | + | - | + | + | + | + | - | - | - | - | - | - | + | + | + | + | - | - | + | + | + | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 57753
- sample type: Sediment
- sampling date: 2003
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Sediment |
#Environmental | #Terrestrial | #Sediment |
External links
@ref: 57753
culture collection no.: CCUG 47561
straininfo link
- @ref: 106669
- straininfo: 111089
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
57753 | Curators of the CCUG | https://www.ccug.se/strain?id=47561 | Culture Collection University of Gothenburg (CCUG) (CCUG 47561) | |
68374 | Automatically annotated from API ID32E | |||
106669 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID111089.1 |