Strain identifier

BacDive ID: 152730

Type strain: No

Species: Mycobacterium abscessus

NCBI tax ID(s): 36809 (species)

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General

@ref: 57719

BacDive-ID: 152730

keywords: Bacteria, microaerophile

description: Mycobacterium abscessus CCUG 47498 is a microaerophile bacterium that was isolated from Human sputum,cystic fibrosis,17-yr-old patient.

NCBI tax id

  • NCBI tax id: 36809
  • Matching level: species

doi: 10.13145/bacdive152730.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium abscessus
  • full scientific name: Mycobacterium abscessus (Moore and Frerichs 1953) Kusunoki and Ezaki 1992

  • synonyms

    @refsynonym
    20215Mycobacterium chelonae subsp. abscessus
    20215Mycobacterium chelonei subsp. abscessus
    20215Mycobacterium abscessus
    20215Mycobacteroides abscessus

@ref: 57719

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium abscessus

type strain: no

Morphology

colony morphology

  • @ref: 57719
  • incubation period: 2 days

Culture and growth conditions

culture temp

  • @ref: 57719
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 57719
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57719C14:04.414
    57719C15:00.415
    57719C16:03616
    57719C17:00.317
    57719C18:02.918
    57719C16:0 anteiso0.415.717
    57719C16:1 ω7c2.415.819
    57719C16:1 ω7c/C15:0 ISO 2OH5.915.85
    57719C16:1 ω9c0.715.774
    57719C17:1 ω8c0.716.792
    57719C18:1 ω9c33.417.769
    57719C18:2 ω6,9c/C18:0 ANTE10.217.724
    57719TBSA 10Me18:0218.392
    57719Unidentified0.318.574
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
57719++++--+-+-----------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57719-+++-+----++---+----

Isolation, sampling and environmental information

isolation

  • @ref: 57719
  • sample type: Human sputum,cystic fibrosis,17-yr-old patient
  • sampling date: 2003-03-01
  • geographic location: Huddinge
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Sputum
#Infection#Disease#Cystic fibrosis
#Infection#Patient
#Host#Human#Child

External links

@ref: 57719

culture collection no.: CCUG 47498

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57719Curators of the CCUGhttps://www.ccug.se/strain?id=47498Culture Collection University of Gothenburg (CCUG) (CCUG 47498)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym