Strain identifier

BacDive ID: 152625

Type strain: No

Species: Mycobacterium abscessus

NCBI tax ID(s): 36809 (species)

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General

@ref: 57590

BacDive-ID: 152625

keywords: Bacteria, microaerophile, mesophilic

description: Mycobacterium abscessus CCUG 47220 is a microaerophile, mesophilic bacterium that was isolated from Human sputum,cystic fibrosis,46-year old.

NCBI tax id

  • NCBI tax id: 36809
  • Matching level: species

doi: 10.13145/bacdive152625.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium abscessus
  • full scientific name: Mycobacterium abscessus (Moore and Frerichs 1953) Kusunoki and Ezaki 1992

  • synonyms

    @refsynonym
    20215Mycobacterium chelonae subsp. abscessus
    20215Mycobacterium chelonei subsp. abscessus
    20215Mycobacterium abscessus
    20215Mycobacteroides abscessus

@ref: 57590

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium abscessus

type strain: no

Culture and growth conditions

culture temp

  • @ref: 57590
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57590
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57590C14:011.214
    57590C15:00.615
    57590C16:03516
    57590C17:00.317
    57590C18:01.318
    57590C14:1 ω5c0.313.899
    57590C16:0 anteiso0.715.717
    57590C16:1 ω7c1.615.819
    57590C16:1 ω7c/C15:0 ISO 2OH8.515.85
    57590C16:1 ω9c115.774
    57590C17:1 ω8c0.516.792
    57590C17:1 ω9c ISO116.416
    57590C18:1 ω9c18.717.769
    57590C18:2 ω6,9c/C18:0 ANTE8.417.724
    57590TBSA 10Me18:09.918.392
    57590Unidentified0.418.566
    57590unknown 13.7660.613.766
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
57590-++---+-+-----------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57590--++-+----++---+----

Isolation, sampling and environmental information

isolation

  • @ref: 57590
  • sample type: Human sputum,cystic fibrosis,46-year old
  • sampling date: 2002-12-01
  • geographic location: Huddinge
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Sputum
#Infection#Disease#Cystic fibrosis
#Infection#Patient

External links

@ref: 57590

culture collection no.: CCUG 47220

straininfo link

  • @ref: 106560
  • straininfo: 110955

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57590Curators of the CCUGhttps://www.ccug.se/strain?id=47220Culture Collection University of Gothenburg (CCUG) (CCUG 47220)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
106560Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID110955.1