Strain identifier
BacDive ID: 152573
Type strain: 
Species: Winogradskyella epiphytica
NCBI tax ID(s): 262005 (species)
version 8.1 (current version)
General
@ref: 57503
BacDive-ID: 152573
keywords: genome sequence, Bacteria, aerobe
description: Winogradskyella epiphytica CCUG 47091 is an aerobe bacterium that was isolated from Green alga .
NCBI tax id
- NCBI tax id: 262005
- Matching level: species
doi: 10.13145/bacdive152573.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Winogradskyella
- species: Winogradskyella epiphytica
- full scientific name: Winogradskyella epiphytica Nedashkovskaya et al. 2005
@ref: 57503
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Winogradskyella
species: Winogradskyella epiphytica
type strain: yes
Culture and growth conditions
culture temp
- @ref: 57503
- growth: positive
- type: growth
- temperature: 20-30
Physiology and metabolism
oxygen tolerance
- @ref: 57503
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
- @ref: 57503
- sample type: Green alga (Acrosiphonia sonderi)
- geographic location: Gulf of Peter the Great
- country: Sea of Japan
- continent: Asia
isolation source categories
- Cat1: #Host
- Cat2: #Algae
- Cat3: #Green algae
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Winogradskyella epiphytica KCTC 12220 | GCA_014651315 | scaffold | ncbi | 262005 |
| 66792 | Winogradskyella epiphytica strain KCTC 12220 | 262005.9 | wgs | patric | 262005 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 95.901 | no |
| gram-positive | no | 98.02 | no |
| anaerobic | no | 98.934 | yes |
| aerobic | yes | 88.184 | no |
| halophile | no | 62.897 | no |
| spore-forming | no | 94.879 | no |
| thermophile | no | 99.167 | no |
| glucose-util | yes | 84.563 | no |
| motile | no | 90.451 | no |
| glucose-ferment | no | 91.816 | no |
External links
@ref: 57503
culture collection no.: CCUG 47091, KMM 3906, KCTC 12220, LMG 22491
straininfo link
- @ref: 106519
- straininfo: 129371
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15653852 | Winogradskyella thalassocola gen. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov., marine bacteria of the family Flavobacteriaceae. | Nedashkovskaya OI, Kim SB, Han SK, Snauwaert C, Vancanneyt M, Swings J, Kim KO, Lysenko AM, Rohde M, Frolova GM, Mikhailov VV, Bae KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.63307-0 | 2005 | Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Eukaryota/*microbiology, Flavobacteriaceae/chemistry/*classification/genetics/isolation & purification, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA | Genetics |
| Phylogeny | 25999595 | Winogradskyella crassostreae sp. nov., isolated from an oyster (Crassostrea gigas). | Park S, Park JM, Won SM, Yoon JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.000350 | 2015 | Animals, Bacterial Typing Techniques, Base Composition, Crassostrea/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 57503 | Curators of the CCUG | https://www.ccug.se/strain?id=47091 | Culture Collection University of Gothenburg (CCUG) (CCUG 47091) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 106519 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID129371.1 |