Strain identifier

BacDive ID: 152521

Type strain: No

Species: Actinobacillus porcitonsillarum

NCBI tax ID(s): 189834 (species)

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General

@ref: 57442

BacDive-ID: 152521

keywords: genome sequence, Bacteria, Gram-negative

description: Actinobacillus porcitonsillarum CCUG 46996 is a Gram-negative bacterium that was isolated from Healthy pig tonsills.

NCBI tax id

  • NCBI tax id: 189834
  • Matching level: species

doi: 10.13145/bacdive152521.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Actinobacillus
  • species: Actinobacillus porcitonsillarum
  • full scientific name: Actinobacillus porcitonsillarum Gottschalk et al. 2003

@ref: 57442

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Actinobacillus

species: Actinobacillus porcitonsillarum

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.982

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.999
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose+builds acid from
6837718257ornithine-degradation
6837716199urea+hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase+3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease+3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57442C12:00.312
    57442C14:024.914
    57442C16:023.316
    57442C18:00.818
    57442C13:0 ISO 2OH0.713.814
    57442C14:0 3OH/C16:1 ISO I5.315.485
    57442C16:1 ω7c38.215.819
    57442C18:1 ω7c /12t/9t0.817.824
    57442C18:1 ω9c117.769
    57442C18:2 ω6,9c/C18:0 ANTE217.724
    57442Unidentified1.910.91
    57442Unidentified0.413.936
    57442unknown 14.5030.514.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57442-+---+----++-+-+----

API NH

@refGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
57442++++-+-++---

Isolation, sampling and environmental information

isolation

  • @ref: 57442
  • sample type: Healthy pig tonsills
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Oral cavity and airways

Sequence information

Genome sequences

  • @ref: 66792
  • description: Actinobacillus porcitonsillarum strain 9953L55
  • accession: 189834.15
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 189834

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno90.611no
gram-positiveno98.216no
anaerobicno97.169no
aerobicno91.644no
halophileno63.206no
spore-formingno98.665no
glucose-utilno58.096no
flagellatedno93.293no
thermophileno99.153no
glucose-fermentyes54.399no

External links

@ref: 57442

culture collection no.: CCUG 46996

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57442Curators of the CCUGhttps://www.ccug.se/strain?id=46996Culture Collection University of Gothenburg (CCUG) (CCUG 46996)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1