Strain identifier

BacDive ID: 152429

Type strain: No

Species: Histophilus somni

NCBI tax ID(s): 731 (species)

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General

@ref: 57336

BacDive-ID: 152429

keywords: Bacteria, microaerophile, mesophilic

description: Histophilus somni CCUG 46769 is a microaerophile, mesophilic bacterium that was isolated from Bovine pneumonia,diseased animal.

NCBI tax id

  • NCBI tax id: 731
  • Matching level: species

doi: 10.13145/bacdive152429.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Histophilus
  • species: Histophilus somni
  • full scientific name: Histophilus somni Angen et al. 2003

@ref: 57336

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Histophilus

species: Histophilus somni

type strain: no

Culture and growth conditions

culture temp

  • @ref: 57336
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57336
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose-builds acid from
6837718257ornithine+degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase+4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57336C12:0412
    57336C14:07.914
    57336C16:032.116
    57336C18:02.218
    57336C13:0 ISO 2OH0.213.814
    57336C14:0 3OH/C16:1 ISO I5.815.485
    57336C16:1 ω5c0.215.908
    57336C16:1 ω7c35.315.819
    57336C18:1 ω5c0.217.919
    57336C18:1 ω7c /12t/9t517.824
    57336C18:1 ω9c1.817.769
    57336C18:2 ω6,9c/C18:0 ANTE3.417.724
    57336C20:1 ω7c0.419.833
    57336Unidentified0.610.909
    57336Unidentified0.313.934
    57336Unidentified0.215.172
    57336unknown 14.5030.514.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57336-+---+----++--+-----

API NH

@refGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
57336+++-+-----+-

Isolation, sampling and environmental information

isolation

  • @ref: 57336
  • sample type: Bovine pneumonia,diseased animal
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Infection#Disease

External links

@ref: 57336

culture collection no.: CCUG 46769

straininfo link

  • @ref: 106395
  • straininfo: 97627

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57336Curators of the CCUGhttps://www.ccug.se/strain?id=46769Culture Collection University of Gothenburg (CCUG) (CCUG 46769)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
106395Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID97627.1