Strain identifier
version 8.1 (current version)
General
@ref: 57179
BacDive-ID: 152301
keywords: genome sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Eubacterium infirmum CCUG 46381 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Human periodontal pockets.
NCBI tax id
- NCBI tax id: 56774
- Matching level: species
doi: 10.13145/bacdive152301.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Eubacterium
- species: Eubacterium infirmum
- full scientific name: Eubacterium infirmum Cheeseman et al. 1996
@ref: 57179
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Eubacteriaceae
genus: Eubacterium
species: Eubacterium infirmum
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.999
Culture and growth conditions
culture temp
- @ref: 57179
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 57179 | anaerobe | |
| 69480 | anaerobe | 98.663 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.991
Isolation, sampling and environmental information
isolation
- @ref: 57179
- sample type: Human periodontal pockets
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Periodontal pocket |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | [Eubacterium] infirmum NCTC12940 | GCA_900450455 | contig | ncbi | 56774 |
| 66792 | [Eubacterium] infirmum strain NCTC12940 | 56774.5 | wgs | patric | 56774 |
| 66792 | Eubacterium infirmum NCTC 12940 | 2835063808 | draft | img | 56774 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 89 | no |
| gram-positive | yes | 54.368 | no |
| anaerobic | yes | 99.332 | no |
| halophile | no | 75.201 | no |
| spore-forming | no | 74.819 | no |
| glucose-util | yes | 77.104 | no |
| thermophile | no | 98.961 | yes |
| flagellated | no | 97.712 | no |
| motile | no | 93.028 | no |
| aerobic | no | 98.82 | yes |
| glucose-ferment | yes | 64.623 | no |
External links
@ref: 57179
culture collection no.: CCUG 46381, NCTC 12940
straininfo link
- @ref: 106292
- straininfo: 93199
literature
- topic: Phylogeny
- Pubmed-ID: 8863423
- title: Phylogeny of oral asaccharolytic Eubacterium species determined by 16S ribosomal DNA sequence comparison and proposal of Eubacterium infirmum sp. nov. and Eubacterium tardum sp. nov.
- authors: Cheeseman SL, Hiom SJ, Weightman AJ, Wade WG
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-46-4-957
- year: 1996
- mesh: Base Sequence, DNA, Ribosomal/*chemistry, Eubacterium/*classification/genetics, Molecular Sequence Data, Mouth/*microbiology, Phylogeny, RNA, Ribosomal, 16S/*genetics
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 57179 | Curators of the CCUG | https://www.ccug.se/strain?id=46381 | Culture Collection University of Gothenburg (CCUG) (CCUG 46381) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 106292 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID93199.1 |