Strain identifier

BacDive ID: 15211

Type strain: Yes

Species: Streptomyces galbus

Strain Designation: Wind 731

Strain history: KCC S-0222 <-- J. Nüesch <-- ETH 24322 <-- W. Frommer Wind 731.

NCBI tax ID(s): 33898 (species)

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General

@ref: 9301

BacDive-ID: 15211

DSM-Number: 40089

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces galbus Wind 731 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 33898
  • Matching level: species

strain history

@refhistory
9301<- E.B. Shirling, ISP <- NRRL <- W. Frommer, Wind 731
67770KCC S-0222 <-- J. Nüesch <-- ETH 24322 <-- W. Frommer Wind 731.

doi: 10.13145/bacdive15211.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces galbus
  • full scientific name: Streptomyces galbus Frommer 1959 (Approved Lists 1980)

@ref: 9301

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces galbus

full scientific name: Streptomyces galbus Frommer 1959

strain designation: Wind 731

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.33
69480100positive

multimedia

  • @ref: 9301
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40089.jpg
  • caption: Medium 65 45°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9301GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9301ISP 5 MEDIUM (DSMZ Medium 993)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium993.pdf
9301ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18530positiveoptimum28mesophilic
9301positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9301actinomycin X
9301actinomycin D
9301dactinomycin
20216Actinomycin x complex (Dactinomycin

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1853017234glucose+
1853022599arabinose+
1853017992sucrose+
1853018222xylose+
1853017268myo-inositol+
1853029864mannitol+
1853028757fructose+
1853026546rhamnose-
1853016634raffinose+
1853062968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refmetaboliteproductionChebi-ID
67770actinomycin Xyes
68368acetoinyes15688
68368indoleno35581
68368hydrogen sulfideyes16136

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18530+++-++-+-++++-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18530+----++--++

Isolation, sampling and environmental information

isolation

  • @ref: 9301
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
93011Risk group (German classification)
185301German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces galbus 16S rRNA gene, strain DSM40089X798521517ena33898
20218Streptomyces galbus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4639D44281120ena33898
20218Streptomyces galbus gene for 16S rRNA, partial sequence, strain: NBRC 12864AB1842011474ena33898

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces galbus JCM 4639GCA_014650535scaffoldncbi33898
66792Streptomyces galbus strain DSM 4008933898.8wgspatric33898
66792Streptomyces galbus strain JCM 463933898.13wgspatric33898
67770Streptomyces galbus DSM 40089GCA_005280195scaffoldncbi33898

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.747no
gram-positiveyes92.245no
anaerobicno99.293no
aerobicyes93.867no
halophileno94.033no
spore-formingyes95.671no
glucose-utilyes88.312no
thermophileno98.844yes
motileno94.25no
glucose-fermentno88.464no

External links

@ref: 9301

culture collection no.: DSM 40089, ATCC 23910, CBS 831.68, ETH 24322, IFO 12864, ISP 5089, NBRC 12864, NRRL B-2283, RIA 1121, JCM 4222, BCRC 12166, CGMCC 4.1958, IMET 42937, JCM 4639, KCTC 19063, NBIMCC 3644, NCIMB 13005, VKM Ac-165

straininfo link

  • @ref: 84309
  • straininfo: 92865

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26296574Streptomyces sasae sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0004542015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purificationGenetics
Phylogeny32228806Streptomyces lasalocidi sp. nov. (formerly 'Streptomyces lasaliensis'), an actinomycete isolated from soil which produces the polyether antibiotic lasalocid.Erwin GS, Heikkinen J, Halimaa P, Haber CLInt J Syst Evol Microbiol10.1099/ijsem.0.0041352020Anti-Bacterial Agents/*biosynthesis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis/chemistry, Fatty Acids/chemistry, Lasalocid/*biosynthesis, Massachusetts, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9301Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40089)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40089
18530Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40089.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84309Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92865.1StrainInfo: A central database for resolving microbial strain identifiers