Strain identifier

BacDive ID: 151858

Type strain: No

Species: Streptococcus agalactiae

NCBI tax ID(s): 1105267 (strain), 1311 (species)

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General

@ref: 56622

BacDive-ID: 151858

keywords: genome sequence, Bacteria

description: Streptococcus agalactiae CCUG 45061 is a bacterium that was isolated from Human blood,newborn.

NCBI tax id

NCBI tax idMatching level
1105267strain
1311species

doi: 10.13145/bacdive151858.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus agalactiae
  • full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptococcus difficile
    20215Streptococcus difficilis

@ref: 56622

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus agalactiae

type strain: no

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: microaerophile
  • confidence: 98.4

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 94.7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837928087glycogen-fermentation
6837917992sucrose+fermentation
6837916899D-mannitol-fermentation
6837917306maltose+fermentation
6837965327D-xylose-fermentation
6837916988D-ribose+fermentation
683795291gelatin-hydrolysis
683794853esculin-hydrolysis
6837917632nitrate-reduction
6837917716lactose-fermentation
6837917634D-glucose+fermentation
6837916199urea-hydrolysis
6838129016arginine+hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate+hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381beta-mannosidase-3.2.1.25
68381urease-3.5.1.5
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381alkaline phosphatase+3.1.3.1
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68379beta-glucosidase-3.2.1.21
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase-3.2.1.22
68381arginine dihydrolase+3.5.3.6
68379catalase-1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
56622---+--------++--+-+--

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
56622+----+------+----+----+---------

Isolation, sampling and environmental information

isolation

  • @ref: 56622
  • sample type: Human blood,newborn
  • sampling date: 2001-03-15
  • geographic location: Tromsö
  • country: Norway
  • origin.country: NOR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood
#Infection#Patient
#Host#Human#Child

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus agalactiae CCUG 45061GCA_000311605contigncbi1105267
66792Streptococcus agalactiae CCUG 450611105267.3wgspatric1105267
66792Streptococcus agalactiae CCUG 450612698536469draftimg1105267

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile98.4
125439BacteriaNetgram_stainReaction to gram-stainingpositive89.9
125439BacteriaNetmotilityAbility to perform movementno77.2
125439BacteriaNetspore_formationAbility to form endo- or exosporesno94.7
125438gram-positivegram-positivePositive reaction to Gram-stainingyes85.277no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no91.223no
125438spore-formingspore-formingAbility to form endo- or exosporesno85.01no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.704no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.442no
125438motile2+flagellatedAbility to perform flagellated movementno89no

External links

@ref: 56622

culture collection no.: CCUG 45061

straininfo link

  • @ref: 105914
  • straininfo: 110255

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
56622Curators of the CCUGhttps://www.ccug.se/strain?id=45061Culture Collection University of Gothenburg (CCUG) (CCUG 45061)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR
105914Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID110255.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG