Strain identifier

BacDive ID: 151785

Type strain: No

Species: Bacillus pumilus

NCBI tax ID(s): 1408 (species)

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General

@ref: 56520

BacDive-ID: 151785

keywords: Bacteria

description: Bacillus pumilus CCUG 44877 is a bacterium that was isolated from Human tissue aspiration.

NCBI tax id

  • NCBI tax id: 1408
  • Matching level: species

doi: 10.13145/bacdive151785.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus pumilus
  • full scientific name: Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)

@ref: 56520

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Bacillus

species: Bacillus pumilus

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
6837117754glycerol-builds acid from
6837117113erythritol-builds acid from
6837117108D-arabinose-builds acid from
6837130849L-arabinose+builds acid from
6837116988D-ribose+builds acid from
6837165327D-xylose-builds acid from
6837165328L-xylose-builds acid from
6837115963ribitol-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837112936D-galactose-builds acid from
6837117634D-glucose+builds acid from
6837115824D-fructose+builds acid from
6837116024D-mannose+builds acid from
6837117266L-sorbose-builds acid from
6837162345L-rhamnose-builds acid from
6837116813galactitol-builds acid from
6837117268myo-inositol-builds acid from
6837116899D-mannitol+builds acid from
6837117924D-sorbitol-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837127613amygdalin-builds acid from
6837118305arbutin+builds acid from
683714853esculin+builds acid from
6837117814salicin+builds acid from
6837117057cellobiose+builds acid from
6837117306maltose-builds acid from
6837117716lactose-builds acid from
6837128053melibiose-builds acid from
6837117992sucrose+builds acid from
6837127082trehalose+builds acid from
6837115443inulin-builds acid from
683716731melezitose-builds acid from
6837116634raffinose-builds acid from
6837128017starch-builds acid from
6837128087glycogen-builds acid from
6837117151xylitol-builds acid from
6837128066gentiobiose-builds acid from
6837132528turanose-builds acid from
6837162318D-lyxose-builds acid from
6837116443D-tagatose+builds acid from
6837128847D-fucose-builds acid from
6837118287L-fucose-builds acid from
6837118333D-arabitol-builds acid from
6837118403L-arabitol-builds acid from
6837124265gluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371Potassium 5-ketogluconate-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
56520+--------++-------+--

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
56520----++-----+++----+-----++++---++---------+-------

Isolation, sampling and environmental information

isolation

  • @ref: 56520
  • sample type: Human tissue aspiration
  • sampling date: 2001-02-06
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Aspirate
#Infection#Patient

External links

@ref: 56520

culture collection no.: CCUG 44877

straininfo link

  • @ref: 105849
  • straininfo: 110185

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
56520Curators of the CCUGhttps://www.ccug.se/strain?id=44877Culture Collection University of Gothenburg (CCUG) (CCUG 44877)
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
105849Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID110185.1