Strain identifier

BacDive ID: 15169

Type strain: No

Species: Streptomyces albus

Strain history: KCC S-0476 <-- IFO 13041 <-- SAJ <-- ISP 5327 <-- J. Nicot 373 <-- ETH 24454.

NCBI tax ID(s): 1888 (species), 67257 (subspecies)

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General

@ref: 9261

BacDive-ID: 15169

DSM-Number: 40327

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-positive

description: Streptomyces albus DSM 40327 is a spore-forming, Gram-positive bacterium that builds an aerial mycelium.

NCBI tax id

NCBI tax idMatching level
1888species
67257subspecies

strain history

@refhistory
9261<- E.B. Shirling, ISP <- J. Nicot, LCP
67770KCC S-0476 <-- IFO 13041 <-- SAJ <-- ISP 5327 <-- J. Nicot 373 <-- ETH 24454.

doi: 10.13145/bacdive15169.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albus
  • full scientific name: Streptomyces albus (Rossi Doria 1891) Waksman and Henrici 1943 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces flocculus
    20215Streptomyces rangoon
    20215Actinomyces gibsonii
    20215Streptotrix alba
    20215Streptomyces gibsonii
    20215Actinomyces flocculus
    20215Streptomyces almquistii
    20215Actinomyces rangoon
    20215Actinomyces almquisti
    20215Streptomyces rangoonensis

@ref: 9261

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albus subsp. albus

full scientific name: Streptomyces albus subsp. albus (Rossi Doria 1891) Nagatsu et al. 1962

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 91.13

colony morphology

@refcolony colorincubation periodmedium used
19438Sun yellow10-14 daysISP 2
19438Ivory10-14 daysISP 3
19438Beige10-14 daysISP 4
19438Brown beige10-14 daysISP 5
19438Sand yellow10-14 daysISP 6
19438Brown beige10-14 daysISP 7

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
19438yesAerial MyceliumSignal whiteISP 2
19438yesAerial MyceliumSignal whiteISP 3
19438yesAerial MyceliumSignal whiteISP 4
19438yesAerial MyceliumOyster whiteISP 5
19438yesAerial MyceliumSignal whiteISP 6
19438yesAerial MyceliumISP 7

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9261GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19438ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19438ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19438ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19438ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19438ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19438ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
9261ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperature
9261positivegrowth28
19438positiveoptimum28
67770positivegrowth28

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: aerobe
  • confidence: 91.045

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 92.904

compound production

@refcompound
9261ferrioxamine E
20216Ferrioxamine E

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1943862968cellulose-
1943816634raffinose+
1943826546rhamnose+
1943828757fructose+
1943829864mannitol+
1943817268myo-inositol+
1943818222xylose-
1943817992sucrose+
1943822599arabinose-
1943817234glucose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
19438+++-+++++++-+-++-+-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19438+++++++---+

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_961.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_751;99_961&stattab=map
  • Last taxonomy: Streptomyces albus subclade
  • 16S sequence: AB184272
  • Sequence Identity:
  • Total samples: 204
  • soil counts: 170
  • aquatic counts: 8
  • animal counts: 22
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
92611Risk group (German classification)
194381Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
9261Streptomyces flocculus gene for 16S rRNA, partial sequence, strain: NBRC 13041AB1842721476nuccore1888
67770Streptomyces flocculus strain NRRL B-2465T 16S ribosomal RNA gene, partial sequenceDQ4424981367nuccore1888
124043Streptomyces flocculus gene for 16S rRNA, partial sequence.AB122772565nuccore1888
124043Streptomyces flocculus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4476.D44171121nuccore1888

Genome sequences

  • @ref: 67770
  • description: Streptomyces albus NRRL B-2465
  • accession: GCA_001418505
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1888

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes91.13no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.93no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes91.045no
69480spore-formingspore-formingAbility to form endo- or exosporesyes92.904no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno94.5yes
69480flagellatedmotile2+Ability to perform flagellated movementno89.5no

External links

@ref: 9261

culture collection no.: DSM 40327, ATCC 25453, CBS 686.69, ETH 24454, IFO 13041, ISP 5327, KCC S-0476, LCP 373, NBRC 13041, NRRL B-2843, RIA 1233, JCM 4476, BCRC 12068, CGMCC 4.1963, HUT 6615, IMET 43522, NRRL 2960, NRRL B-2465

straininfo link

  • @ref: 84272
  • straininfo: 389309

literature

  • topic: Phylogeny
  • Pubmed-ID: 24814337
  • title: Streptomyces chumphonensis sp. nov., isolated from marine sediments.
  • authors: Phongsopitanun W, Thawai C, Suwanborirux K, Kudo T, Ohkuma M, Tanasupawat S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.062992-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
9261Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40327)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40327
19438Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40327.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
84272Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389309.1StrainInfo: A central database for resolving microbial strain identifiers
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy