Strain identifier

BacDive ID: 151639

Type strain: No

Species: Microbacterium sp.

NCBI tax ID(s): 51671 (species)

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General

@ref: 56352

BacDive-ID: 151639

keywords: Bacteria

description: Microbacterium sp. CCUG 44502 is a bacterium that was isolated from Human cerebrospinal fluid,14-yr-old female.

NCBI tax id

  • NCBI tax id: 51671
  • Matching level: species

doi: 10.13145/bacdive151639.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium sp.
  • full scientific name: Microbacterium Orla-Jensen 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Aureobacterium

@ref: 56352

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium sp.

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase+3.2.1.51

fatty acid profile

  • @reffatty acidpercentageECL
    56352C15:03.115
    56352C16:01.216
    56352C15:0 ANTEISO40.414.711
    56352C15:0 ISO1014.621
    56352C15:1 ANTEISO A0.314.526
    56352C16:0 iso6.415.626
    56352C17:0 anteiso28.416.722
    56352C17:0 iso3.416.629
    56352C17:1 ω5c2.816.918
    56352C18:2 ω6,9c/C18:0 ANTE0.317.724
    56352Unidentified114.923
    56352Unidentified0.715.927
    56352Unidentified0.416.931
    56352Unidentified1.619.184
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    56352C15:03.115
    56352C16:01.216
    56352C15:0 ANTEISO40.414.711
    56352C15:0 ISO1014.621
    56352C15:1 ANTEISO A0.314.526
    56352C16:0 iso6.415.626
    56352C17:0 anteiso28.416.722
    56352C17:0 iso3.516.629
    56352C17:1 ω5c2.816.918
    56352C18:2 ω6,9c/C18:0 ANTE0.317.724
    56352Unidentified114.923
    56352Unidentified0.715.927
    56352Unidentified0.416.931
    56352Unidentified1.619.184
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
56352-+++-++++-+---------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
56352-+++-+----++-+-+++++

Isolation, sampling and environmental information

isolation

  • @ref: 56352
  • sample type: Human cerebrospinal fluid,14-yr-old female
  • sampling date: 2000-10-07
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body Product#Fluids#Cerebrospinal fluid
#Infection#Patient

External links

@ref: 56352

culture collection no.: CCUG 44502

straininfo link

  • @ref: 105729
  • straininfo: 302896

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
56352Curators of the CCUGhttps://www.ccug.se/strain?id=44502Culture Collection University of Gothenburg (CCUG) (CCUG 44502)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
105729Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID302896.1