Strain identifier

BacDive ID: 15162

Type strain: Yes

Species: Streptomyces flavotricini

Strain history: KCC S-0371 <-- IFO 12770 <-- SAJ <-- ISP 5152 <-- INA 11669/58.

NCBI tax ID(s): 66888 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9351

BacDive-ID: 15162

DSM-Number: 40152

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces flavotricini DSM 40152 is a mesophilic bacterium that was isolated from mountain forest soil.

NCBI tax id

  • NCBI tax id: 66888
  • Matching level: species

strain history

@refhistory
9351<- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA
67770KCC S-0371 <-- IFO 12770 <-- SAJ <-- ISP 5152 <-- INA 11669/58.

doi: 10.13145/bacdive15162.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces flavotricini
  • full scientific name: Streptomyces flavotricini (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces flavotricini

@ref: 9351

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces flavotricini

full scientific name: Streptomyces flavotricini (Preobrazhenskaya and Sveshnikova 1957) Pridham et al. 1958

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 9351
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18549positiveoptimum28mesophilic
9351positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 9351
  • compound: aminoacylase

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1854917234glucose+
1854922599arabinose-
1854917992sucrose+
1854918222xylose-
1854917268myo-inositol+
1854929864mannitol-
1854928757fructose-
1854926546rhamnose+/-
1854916634raffinose+
1854962968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18549+++++++++++---++++-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18549-++++-+---+

Isolation, sampling and environmental information

isolation

@refsample type
9351mountain forest soil
67770Soil

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1810.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_144;99_1810&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY999915
  • Sequence Identity:
  • Total samples: 6072
  • soil counts: 4236
  • aquatic counts: 230
  • animal counts: 299
  • plant counts: 1307

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185491German classification
93511Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces flavotricini gene for 16S ribosomal RNA, partial sequence, strain: JCM 4371D44087120ena66888
20218Streptomyces flavotricini gene for 16S rRNA, partial sequence, strain: NBRC 12770AB1841321475ena66888
20218Streptomyces flavotricini strain NRRL B-5419 16S ribosomal RNA gene, partial sequenceAY9999151315ena66888

Genome sequences

  • @ref: 67770
  • description: Streptomyces flavotricini NRRL B-5419
  • accession: GCA_000715705
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 66888

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.024no
flagellatedno97.696no
gram-positiveyes86.56no
anaerobicno98.947no
halophileno93.126no
spore-formingyes93.344no
glucose-utilyes89.596yes
aerobicyes89.74no
thermophileno98.794yes
glucose-fermentno90.771no

External links

@ref: 9351

culture collection no.: DSM 40152, ATCC 19757, ATCC 23621, CBS 495.68, IFO 12770, INA 11669/58, ISP 5152, NBRC 12770, RIA 1037, JCM 4371, BCRC 13762, CGMCC 4.1959, IMET 42057, NRRL B-5419, VKM Ac-1277

straininfo link

  • @ref: 84266
  • straininfo: 389279

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24664662Streptomyces amritsarensis sp. nov., exhibiting broad-spectrum antimicrobial activity.Sharma D, Mayilraj S, Manhas RKAntonie Van Leeuwenhoek10.1007/s10482-014-0151-22014Anti-Infective Agents/*metabolism, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fungi/drug effects, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, India, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolismPathogenicity
Phylogeny26703868Streptomyces yangpuensis sp. nov., isolated from soil.Tang B, Yu Y, Zhi X, Yang L, Cen X, Zhao G, Ding XInt J Syst Evol Microbiol10.1099/ijsem.0.0008612015

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9351Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40152)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40152
18549Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40152.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84266Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389279.1StrainInfo: A central database for resolving microbial strain identifiers