Strain identifier

BacDive ID: 151604

Type strain: No

Species: Comamonas denitrificans

NCBI tax ID(s): 117506 (species)

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General

@ref: 56312

BacDive-ID: 151604

keywords: Bacteria

description: Comamonas denitrificans CCUG 44428 is a bacterium that was isolated from Sludge,activated.

NCBI tax id

  • NCBI tax id: 117506
  • Matching level: species

doi: 10.13145/bacdive151604.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas denitrificans
  • full scientific name: Comamonas denitrificans Gumaelius et al. 2001

@ref: 56312

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas denitrificans

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • @reffatty acidpercentageECL
    56312C12:02.512
    56312C14:02.714
    56312C15:01.415
    56312C16:021.616
    56312C17:00.517
    56312C10:0 3OH3.711.423
    56312C15:0 ISO 3OH5.216.135
    56312C16:1 ω7c44.615.819
    56312C18:1 ω7c /12t/9t12.817.824
    56312Unidentified0.612.266
    56312Unidentified0.614.281
    56312Unidentified316.297
    56312Unidentified0.918.139
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    56312C12:02.512
    56312C14:02.714
    56312C15:01.415
    56312C16:021.616
    56312C17:00.517
    56312C10:0 3OH3.711.423
    56312C15:0 ISO 3OH5.216.135
    56312C16:1 ω7c44.615.819
    56312C18:1 ω7c /12t/9t12.817.824
    56312Unidentified0.612.266
    56312Unidentified0.614.281
    56312Unidentified316.297
    56312Unidentified0.918.139
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
56312+----------------+--+

Isolation, sampling and environmental information

isolation

  • @ref: 56312
  • sample type: Sludge,activated
  • geographic location: Stockholm,Kappala
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Activated sludge

External links

@ref: 56312

culture collection no.: CCUG 44428, ATCC 700940

straininfo link

  • @ref: 105701
  • straininfo: 46981

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
56312Curators of the CCUGhttps://www.ccug.se/strain?id=44428Culture Collection University of Gothenburg (CCUG) (CCUG 44428)
68369Automatically annotated from API 20NE
105701Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID46981.1