Strain identifier
BacDive ID: 15159
Type strain: 
Species: Streptomyces flaveus
Strain history: KCC A-0035 <-- IMRU 3857.
NCBI tax ID(s): 66370 (species)
version 9.1 (current version)
General
@ref: 10822
BacDive-ID: 15159
DSM-Number: 43153
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Streptomyces flaveus DSM 43153 is a spore-forming bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 66370
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10822 | <- P. Hirsch <- ATCC <- H. A. Lechevalier, IMRU |
| 67770 | KCC A-0035 <-- IMRU 3857. |
doi: 10.13145/bacdive15159.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces flaveus
- full scientific name: Streptomyces flaveus (Cross et al. 1963) Goodfellow et al. 1986
synonyms
- @ref: 20215
- synonym: Microellobosporia flavea
@ref: 10822
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces flaveus
full scientific name: Streptomyces flaveus (Cross et al. 1963) Goodfellow et al. 1986
type strain: yes
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 90.5
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10822 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10822 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 10822 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 100
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H4), MK-9(H8)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 10822 | soil | Orly | France | FRA | Europe |
| 67770 | Soil | sea shore of St. Raphael | France | FRA | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_56089.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_2803;97_3443;98_4349;99_56089&stattab=map
- Last taxonomy: Streptomyces flaveus
- 16S sequence: DQ026643
- Sequence Identity:
- Total samples: 206
- soil counts: 187
- aquatic counts: 7
- animal counts: 3
- plant counts: 9
Safety information
risk assessment
- @ref: 10822
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces flaveus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3035 | D43971 | 120 | nuccore | 66370 |
| 20218 | Streptomyces flaveus gene for 16S rRNA, partial sequence, strain: NBRC 12190 | AB184065 | 1456 | nuccore | 66370 |
| 20218 | Streptomyces flaveus strain NRRL B-16074 16S ribosomal RNA gene, partial sequence | DQ026643 | 1501 | nuccore | 66370 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces flaveus JCM 3035 | GCA_014647675 | scaffold | ncbi | 66370 |
| 66792 | Streptomyces flaveus strain JCM 3035 | 66370.7 | wgs | patric | 66370 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 71 | thermal denaturation, midpoint method (Tm) |
| 67770 | 67.9 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.048 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.83 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 87.823 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 89.704 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.4 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90.5 | no |
External links
@ref: 10822
culture collection no.: DSM 43153, ATCC 15332, CBS 355.67, DSM 43029, IFO 12190, IMET 43554, IMRU 3857, JCM 3035, KCC A-0035, NBRC 12190, NCIB 9587, RIA 896, IFM 1234, LMG 19323, NCIMB 9587, NRRL B-16074, VKM Ac-1295, VKM Ac-633
straininfo link
- @ref: 84263
- straininfo: 88645
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10822 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43153) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43153 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84263 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID88645.1 | StrainInfo: A central database for resolving microbial strain identifiers |