Strain identifier

BacDive ID: 15134

Type strain: Yes

Species: Streptomyces griseoincarnatus

Strain history: IFO 14601 <-- ATCC 27427 <-- CBS 485.74 <-- V. Johanides.

NCBI tax ID(s): 284027 (species)

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General

@ref: 9326

BacDive-ID: 15134

DSM-Number: 40116

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces griseoincarnatus DSM 40116 is a mesophilic bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 284027
  • Matching level: species

strain history

@refhistory
9326<- E.B. Shirling, ISP <- Falcao de Morais, IAUR, 1173
67770IFO 14601 <-- ATCC 27427 <-- CBS 485.74 <-- V. Johanides.

doi: 10.13145/bacdive15134.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces griseoincarnatus
  • full scientific name: Streptomyces griseoincarnatus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces variabilis
    20215Streptomyces erythrogriseus
    20215Actinomyces griseoincarnatus
    20215Streptomyces variabilis

@ref: 9326

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces erythrogriseus

full scientific name: Streptomyces erythrogriseus Falcão de Morais and Dália Maia 1959

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 9326
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18539positiveoptimum28mesophilic
9326positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 9326
  • compound: erygrisin

halophily

  • @ref: 18539
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1853917234glucose+
1853922599arabinose+
1853917992sucrose-
1853918222xylose+
1853917268myo-inositol+/-
1853929864mannitol+/-
1853928757fructose+
1853926546rhamnose+
1853916634raffinose-
1853962968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18539+--------++

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_408.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_408&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AJ781328
  • Sequence Identity:
  • Total samples: 50
  • soil counts: 30
  • animal counts: 18
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185391German classification
93261Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces erythrogriseus 16S rRNA gene, type strain LMG 19406AJ7813281480ena284027
20218Streptomyces erythrogriseus gene for 16S rRNA, partial sequence, strain: NBRC 14601AB1846051437ena284027

External links

@ref: 9326

culture collection no.: DSM 40116, AS 4.1373, ATCC 27427, CBS 485.74, ISP 5116, IAUR 1173, JCM 9650, BCRC 13770, CGMCC 4.1373, IFO 14601, NBRC 14601, NRRL B-3808, VTT E-022183

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23355697Streptomyces wuyuanensis sp. nov., an actinomycete from soil.Zhang X, Zhang J, Zheng J, Xin D, Xin Y, Pang HInt J Syst Evol Microbiol10.1099/ijs.0.047050-02013Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny24306769Streptomyces tunisiensis sp. nov., a novel Streptomyces species with antibacterial activity.Slama N, Mankai H, Ayed A, Mezhoud K, Rauch C, Lazim H, Barkallah I, Gtari M, Limam FAntonie Van Leeuwenhoek10.1007/s10482-013-0086-z2013*Antibiosis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Methicillin-Resistant Staphylococcus aureus/*growth & development, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Spores, Bacterial/cytology, Streptomyces/*classification/genetics/isolation & purification/*physiology, TunisiaGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9326Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40116)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40116
18539Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40116.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta