Strain identifier

BacDive ID: 15126

Type strain: No

Species: Streptomyces diastatochromogenes

Strain Designation: IN-701

Strain history: KCC S-0244 <-- Res. Labs., Ihara Noyaku Co., Ltd.; IN-701.

NCBI tax ID(s): 42236 (species)

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General

@ref: 9682

BacDive-ID: 15126

DSM-Number: 40608

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces diastatochromogenes IN-701 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 42236
  • Matching level: species

strain history

@refhistory
9682<- M. Kocur, CCM <- KCC <- K. Akasaki, IN-701 (Streptomyces diastatochromogenes var. luteus)
67770KCC S-0244 <-- Res. Labs., Ihara Noyaku Co., Ltd.; IN-701.

doi: 10.13145/bacdive15126.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces diastatochromogenes
  • full scientific name: Streptomyces diastatochromogenes (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces diastatochromogenes

@ref: 9682

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces diastatochromogenes

full scientific name: Streptomyces diastatochromogenes (Krainsky 1914) Waksman and Henrici 1948

strain designation: IN-701

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9682GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9682ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9682positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9682
  • compound: primocarcin

metabolite production

  • @ref: 67770
  • metabolite: primocarcin
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
9682soilJapanJPNAsia
67770SoilJapanJPNAsiaMori-machi, Shizuoka Pref.

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_7980.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_224;98_253;99_7980&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184503
  • Sequence Identity:
  • Total samples: 787
  • soil counts: 547
  • aquatic counts: 19
  • animal counts: 29
  • plant counts: 192

Safety information

risk assessment

  • @ref: 9682
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Streptomyces diastatochromogenes subsp. luteus gene for 16S rRNA, partial sequence, strain: NBRC 13814
  • accession: AB184503
  • length: 1477
  • database: ena
  • NCBI tax ID: 285494

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces diastatochromogenes strain DSM 4060842236.6wgspatric42236
67770Streptomyces diastatochromogenes DSM 40608GCA_002242805scaffoldncbi42236
66792Streptomyces diastatochromogenes ATCC 23862GCA_026913245contigncbi42236

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes86.219no
anaerobicno98.914no
halophileno94.897no
spore-formingyes93.731no
glucose-utilyes88.969no
aerobicyes92.071no
flagellatedno97.913no
thermophileno98.688yes
motileno94.389no
glucose-fermentno90.607no

External links

@ref: 9682

culture collection no.: DSM 40608, ATCC 23862, CCM 3013, IFO 13814, JCM 4244, KCC S-0244, NBRC 13814, KCTC 9720, NCIMB 10210

straininfo link

  • @ref: 84231
  • straininfo: 264292

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9682Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40608)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40608
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84231Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID264292.1StrainInfo: A central database for resolving microbial strain identifiers