Strain identifier

BacDive ID: 1512

Type strain: Yes

Species: Jeotgalibacillus campisalis

Strain Designation: SF-57

Strain history: CIP <- 2004, JCM <- 2002, J. H. Yoon, Korea: strain SF-57

NCBI tax ID(s): 220754 (species)

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General

@ref: 7814

BacDive-ID: 1512

DSM-Number: 18983

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Jeotgalibacillus campisalis SF-57 is an aerobe, spore-forming, mesophilic bacterium that was isolated from marine solar saltern.

NCBI tax id

  • NCBI tax id: 220754
  • Matching level: species

strain history

@refhistory
7814<- CIP <- JCM <- J.-H. Yoon; SF-57
67770J.-H. Yoon SF-57.
117121CIP <- 2004, JCM <- 2002, J. H. Yoon, Korea: strain SF-57

doi: 10.13145/bacdive1512.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Jeotgalibacillus
  • species: Jeotgalibacillus campisalis
  • full scientific name: Jeotgalibacillus campisalis (Yoon et al. 2004) Yoon et al. 2010

  • synonyms

    • @ref: 20215
    • synonym: Marinibacillus campisalis

@ref: 7814

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Jeotgalibacillus

species: Jeotgalibacillus campisalis

full scientific name: Jeotgalibacillus campisalis (Yoon et al. 2004) Yoon et al. 2010

strain designation: SF-57

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29980positive3.25 µm1.45 µmrod-shapedyes
69480yes93.39
69480positive100
117121positiveoval-shapedyes

colony morphology

  • @ref: 117121

pigmentation

  • @ref: 29980
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7814BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33971Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
117121CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
7814positivegrowth30mesophilic
29980positivegrowth4.0-39
29980positiveoptimum30mesophilic
33971positivegrowth30mesophilic
67770positivegrowth30mesophilic
117121positivegrowth10-37
117121nogrowth45thermophilic
117121nogrowth55thermophilic

culture pH

@refabilitytypepH
29980positiveoptimum7.5
117121nogrowth6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29980aerobe
117121obligate aerobe

spore formation

@refspore formationconfidence
29980yes
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
29980NaClpositivegrowth0.5-15 %
29980NaClpositiveoptimum2.5 %
117121NaClpositivegrowth2-10 %
117121NaClnogrowth0 %

observation

  • @ref: 67770
  • observation: quinones: MK-7, MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2998017057cellobiose+carbon source
2998028757fructose+carbon source
2998017234glucose+carbon source
2998017306maltose+carbon source
2998029864mannitol+carbon source
2998028053melibiose+carbon source
2998017992sucrose+carbon source
2998027082trehalose+carbon source
299804853esculin+hydrolysis
2998017632nitrate+reduction
11712116947citrate-carbon source
1171214853esculin+hydrolysis
117121606565hippurate-hydrolysis
11712117632nitrate+reduction
11712116301nitrite-reduction

metabolite production

  • @ref: 117121
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11712115688acetoin-
11712117234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
117121oxidase-
117121beta-galactosidase+3.2.1.23
117121alcohol dehydrogenase-1.1.1.1
117121gelatinase-
117121amylase+
117121DNase+
117121caseinase-3.4.21.50
117121catalase+1.11.1.6
117121tween esterase-
117121gamma-glutamyltransferase-2.3.2.2
117121lecithinase-
117121lipase-
117121lysine decarboxylase-4.1.1.18
117121ornithine decarboxylase-4.1.1.17
117121urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117121-+++-+---+++-+-+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
7814marine solar salternRepublic of KoreaKORAsia
67770Marine solar salternRepublic of KoreaKORAsiaBaekryung Island
117121Environment, Marine solar salternRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Condition#Saline
#Engineered#Industrial#Industrial production
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_5653.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1505;97_1796;98_4213;99_5653&stattab=map
  • Last taxonomy: Jeotgalibacillus
  • 16S sequence: AY190535
  • Sequence Identity:
  • Total samples: 719
  • soil counts: 275
  • aquatic counts: 244
  • animal counts: 167
  • plant counts: 33

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
78141Risk group (German classification)
1171211Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7814
  • description: Marinibacillus campisalis 16S ribosomal RNA gene, partial sequence
  • accession: AY190535
  • length: 1506
  • database: ena
  • NCBI tax ID: 220754

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jeotgalibacillus campisalis SF-57220754.4wgspatric220754
67770Jeotgalibacillus campisalis SF-57GCA_000829515contigncbi220754

GC content

@refGC-contentmethod
781441.8
6777041.8high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes88.015yes
gram-positiveyes91.884no
anaerobicno98.968yes
aerobicyes96.11yes
halophileyes73.84no
spore-formingyes95.292yes
glucose-utilyes89.921no
flagellatedyes82.691no
thermophileno99.252yes
glucose-fermentno92.617no

External links

@ref: 7814

culture collection no.: DSM 18983, CIP 108511, JCM 11810, KCCM 41644

straininfo link

  • @ref: 71158
  • straininfo: 132784

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15280308Marinibacillus campisalis sp. nov., a moderate halophile isolated from a marine solar saltern in Korea, with emended description of the genus Marinibacillus.Yoon JH, Kim IG, Schumann P, Oh TK, Park YHInt J Syst Evol Microbiol10.1099/ijs.0.02779-02004Bacillaceae/*classification/cytology/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Fatty Acids/analysis, Genes, rRNA, Gentian Violet, Geologic Sediments/*microbiology, Growth Inhibitors/pharmacology, Korea, Molecular Sequence Data, Movement, Peptidoglycan/chemistry, Phenazines, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Sodium Chloride/pharmacology, Spores, Bacterial/cytology, Temperature, Water MicrobiologyGenetics
Phylogeny19643870Jeotgalibacillus salarius sp. nov., isolated from a marine saltern, and reclassification of Marinibacillus marinus and Marinibacillus campisalis as Jeotgalibacillus marinus comb. nov. and Jeotgalibacillus campisalis comb. nov., respectively.Yoon JH, Kang SJ, Schumann P, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.008318-02009Bacillales/*classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny21531739Jeotgalibacillus soli sp. nov., a Gram-stain-positive bacterium isolated from soil.Cunha S, Tiago I, Paiva G, Nobre F, da Costa MS, Verissimo AInt J Syst Evol Microbiol10.1099/ijs.0.028878-02011Aerobiosis, Bacterial Typing Techniques, Base Composition, Benzoquinones/analysis, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Lysine/analysis, Molecular Sequence Data, Oxidoreductases/metabolism, Peptidoglycan/chemistry, Phylogeny, Planococcaceae/*classification/genetics/*isolation & purification/physiology, Portugal, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureMetabolism
Genetics25999308Draft genome of Jeotgalibacillus campisalis SF-57(T), a moderate halophilic bacterium isolated from marine saltern.Yaakop AS, Chan KG, Gan HM, Goh KMMar Genomics10.1016/j.margen.2015.05.0042015DNA, Bacterial/genetics, *Genome, Bacterial, Planococcaceae/*genetics, Seawater/microbiology
Phylogeny30328805Jeotgalibacillus proteolyticus sp. nov., a protease-producing bacterium isolated from ocean sediments.Li Y, Zhang Z, Xu Z, Fang D, Wang ET, Shao S, Du Z, Liu W, Xie ZInt J Syst Evol Microbiol10.1099/ijsem.0.0030602018Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Peptide Hydrolases, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
7814Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18983)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18983
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29980Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2634828776041
33971Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6142
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71158Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID132784.1StrainInfo: A central database for resolving microbial strain identifiers
117121Curators of the CIPCollection of Institut Pasteur (CIP 108511)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108511