Strain identifier

BacDive ID: 15104

Type strain: Yes

Species: Streptomyces coeruleofuscus

Strain Designation: 2922/57

Strain history: KCC S-0358 <-- IFO 12757 <-- SAJ <-- ISP 5144 <-- INA 2922/57.

NCBI tax ID(s): 66879 (species)

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General

@ref: 9344

BacDive-ID: 15104

DSM-Number: 40144

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces coeruleofuscus 2922/57 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 66879
  • Matching level: species

strain history

@refhistory
9344<- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA, 2922/57
67770KCC S-0358 <-- IFO 12757 <-- SAJ <-- ISP 5144 <-- INA 2922/57.

doi: 10.13145/bacdive15104.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces coeruleofuscus
  • full scientific name: Streptomyces coeruleofuscus (Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces coeruleofuscus

@ref: 9344

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces coeruleofuscus

full scientific name: Streptomyces coeruleofuscus (Preobrazhenskaya 1957) Pridham et al. 1958

strain designation: 2922/57

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 9344
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18544positiveoptimum28mesophilic
9344positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1854417234glucose+
1854422599arabinose+
1854417992sucrose+
1854418222xylose-
1854417268myo-inositol+
1854429864mannitol+
1854428757fructose+
1854426546rhamnose+
1854416634raffinose+
1854462968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18544+++-++---++-+-++++-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18544+++++-----+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9344soilDaghestanUSSRRUSAsia
67770SoilCaucasusUSSR

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_486.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_384;99_486&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: DQ026668
  • Sequence Identity:
  • Total samples: 5
  • aquatic counts: 1
  • animal counts: 3
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185441German classification
93441Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces coeruleofuscus partial 16S rRNA gene, strain ISP 5144AJ3994731447ena66879
20218Streptomyces coeruleofuscus strain JCM 4358 16S ribosomal RNA gene, partial sequenceAY9997681416ena66879
20218Streptomyces coeruleofuscus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4358D44076121ena66879
20218Streptomyces coeruleofuscus gene for 16S rRNA, partial sequence, strain: NBRC 12757AB1848401476ena66879
20218Streptomyces coeruleofuscus strain NRRL B-5417 16S ribosomal RNA gene, partial sequenceDQ0266681493ena66879

GC content

  • @ref: 67770
  • GC-content: 72.4
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 9344

culture collection no.: DSM 40144, ATCC 19741, ATCC 23618, CBS 480.68, IFO 12757, ISP 5144, NBRC 12757, RIA 1022, JCM 4358, BCRC 12186, CGMCC 4.1667, IMET 43574, INA 2922/57, NRRL B-5417, VKM Ac-619

straininfo link

  • @ref: 84210
  • straininfo: 46623

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24994773Streptomyces pluripotens sp. nov., a bacteriocin-producing streptomycete that inhibits meticillin-resistant Staphylococcus aureus.Lee LH, Zainal N, Azman AS, Eng SK, Ab Mutalib NS, Yin WF, Chan KGInt J Syst Evol Microbiol10.1099/ijs.0.065045-02014*Antibiosis, Avicennia, Bacterial Typing Techniques, Bacteriocins/*biosynthesis, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Malaysia, Methicillin-Resistant Staphylococcus aureus, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification/*metabolism, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25218304Streptomyces canchipurensis sp. nov., isolated from a limestone habitat.Li WJ, Nimaichand S, Jiang Z, Liu MJ, Khieu TN, Kim CJ, Hozzein WN, Park DJ, Wadaan MA, Ningthoujam DSAntonie Van Leeuwenhoek10.1007/s10482-014-0281-62014Bacterial Typing Techniques, *Calcium Carbonate, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Environmental Microbiology, Fatty Acids/analysis, India, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysisGenetics
Phylogeny25331336Streptomyces ferrugineus sp. nov., isolated from mangrove soil in Thailand.Ruan CY, Zhang L, Ye WW, Xie XC, Srivibool R, Duangmal K, Pathom-aree W, Deng ZX, Hong KAntonie Van Leeuwenhoek10.1007/s10482-014-0301-62014Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification, Thailand, Vitamin K 2/analysisGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9344Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40144)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40144
18544Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40144.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84210Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46623.1StrainInfo: A central database for resolving microbial strain identifiers