Strain identifier

BacDive ID: 150964

Type strain: No

Species: Mycobacterium abscessus

NCBI tax ID(s): 36809 (species)

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General

@ref: 55588

BacDive-ID: 150964

keywords: Bacteria

description: Mycobacterium abscessus CCUG 42873 is a bacterium that was isolated from Human sputum,cystic fibrosis.

NCBI tax id

  • NCBI tax id: 36809
  • Matching level: species

doi: 10.13145/bacdive150964.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium abscessus
  • full scientific name: Mycobacterium abscessus (Moore and Frerichs 1953) Kusunoki and Ezaki 1992

  • synonyms

    @refsynonym
    20215Mycobacterium chelonae subsp. abscessus
    20215Mycobacterium chelonei subsp. abscessus
    20215Mycobacterium abscessus
    20215Mycobacteroides abscessus

@ref: 55588

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium abscessus

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    55588C14:0614
    55588C15:00.815
    55588C16:030.516
    55588C17:00.617
    55588C18:01.318
    55588C16:1 ω7c3.615.819
    55588C16:1 ω7c/C15:0 ISO 2OH13.115.85
    55588C16:1 ω9c1.815.774
    55588C17:1 ω8c1.616.792
    55588C18:1 ω9c26.217.769
    55588C18:2 ω6,9c/C18:0 ANTE4.717.724
    55588TBSA 10Me18:09.718.392
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
55588--++--+-+-----------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
55588-+++-+-+--++---++---

Isolation, sampling and environmental information

isolation

  • @ref: 55588
  • sample type: Human sputum,cystic fibrosis
  • sampling date: 1999-10-06
  • geographic location: Uppsala
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Disease#Cystic fibrosis
#Host#Human
#Infection#Patient
#Host Body Product#Fluids#Sputum

External links

@ref: 55588

culture collection no.: CCUG 42873

straininfo link

  • @ref: 105158
  • straininfo: 109386

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
55588Curators of the CCUGhttps://www.ccug.se/strain?id=42873Culture Collection University of Gothenburg (CCUG) (CCUG 42873)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
105158Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID109386.1